Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0781 ATGCAAAACCAATGGAACCTAAACGAACATGTCAAATCCATATTGCAAAAAAGCAAACACCTCAACCATCTGAAGCAACTCCAAGCTTACCTCATCACCTTAGGTCACTCCCAAACCCACTTCTACGCTTTCAAACTCCTTCGTTTCTGCGCTCTTTCCCTCTCAAATCTTCACTATTCTCGCCTCATTTTTTACCATCTTGTTTCTCCAAACATCTTCCTCTACACCGCAATGATCACCGCTTACGCTTCACACCCTCACACCCACCCTTCCGCCATCGCCTTATACCGCAACATGGTTCGTCACAGTGCCGAAAAACCAAACCAGTTCATTTACCCACATGTTCTCAAATCGTGCCCACAAGTGATGGAACCGCGTGGCACTGATTTGGTGCATGCCCAGATAATAAAATCGGGGTTTGAGCAATACCCAGTTGTCGAAACGGCTCTGGTTGACTCTTACTCAAGGAGTTTGGGCAATGTTGGGAGTGCCAGGAAGGTGTTTGATGAAATGTCTGACAGAAATGTTGTTTCTTTTACTGCTATGGTTTCTGGGTATGCGAGGGCTGGGGATGTGGAGAATGCTGTGAAGTTGTTTGATGAAATTCCGGAGAGGGATGTGCCGTGTTGGAATGCTCTGATTGCTGGTTGCACTCAGAATGGGTTTTTCTCTGAGGGGATTAGATTGTTTAGGAAAATGGTTGTTCTTGCTACTGATGAGCAATATCGATTTAACAAGCCGAATCAGGTTACGGTGGTTTGTGCGCTTTCGGCTTGTGGCAACACAGGTATGCTACAGCTTGGGAAATGGATACATGGTTATGTTTACAAGAATGGTTTTGCTATTGACTCGTTTATCTCAAATGCTCTTGTGGATATGTATGGGAAATGCGGCAACCTTAAACAGGCACTCAAGGTTTTCGAGATGAATCCAAACAAAGGATTAACTTCTTGGAATTCAATGATCAACTCTTTTGCACTCCACGGGCAGAGCGATTATGCGATCGCTGTTTTTGAGCAGATGATGAAGCATAGTGGTGGTATAAGACCAGATGAAGTTACCTTCATTGGGTTGTTAAATGCTTGTACTCATGGAGGACTAGTAGAAAAAGGTTATTGCTATTTCAAAATGATGGTTCAGGAATTTGGGATAGAGCCTCGTATCGACCACTATGGGTGTTTGATAGACCTACTTGGTCGTGCGGGACGATTTGATGAGGCAATGGAAGTTGTCAGTAGTATGAGCATGGAACCAGATGAGGTCATTTGGGGTTCTTTGCTTAATGGATGCAAGGTTTATGGCCGTACAGATTTGGCCGAAATAGCGGCCAAAAAATTAGTTGCAATAGATCCACATAATGGTGGTTATGGTATAATGTTGGCTAATGTATATGGAGAATTAGGAAAATGGGATGAAGTGAGAAATGTATGGAGAACAATGAAGGAGCAAAAGTCTTATAAAATTCCAGGCTGCAGCTGGATTGAACTTGATGACCAAGTTCATCAGTTCTATTCCCTTGATAAATCTAATCCAAAAGCAGAAGAATTGTACAGTGTCTTGGAGAGTCTCATTGGCTTTAGAAATGAAGTCAAGGTGGAATTATAG 1605 0.4293 MQNQWNLNEHVKSILQKSKHLNHLKQLQAYLITLGHSQTHFYAFKLLRFCALSLSNLHYSRLIFYHLVSPNIFLYTAMITAYASHPHTHPSAIALYRNMVRHSAEKPNQFIYPHVLKSCPQVMEPRGTDLVHAQIIKSGFEQYPVVETALVDSYSRSLGNVGSARKVFDEMSDRNVVSFTAMVSGYARAGDVENAVKLFDEIPERDVPCWNALIAGCTQNGFFSEGIRLFRKMVVLATDEQYRFNKPNQVTVVCALSACGNTGMLQLGKWIHGYVYKNGFAIDSFISNALVDMYGKCGNLKQALKVFEMNPNKGLTSWNSMINSFALHGQSDYAIAVFEQMMKHSGGIRPDEVTFIGLLNACTHGGLVEKGYCYFKMMVQEFGIEPRIDHYGCLIDLLGRAGRFDEAMEVVSSMSMEPDEVIWGSLLNGCKVYGRTDLAEIAAKKLVAIDPHNGGYGIMLANVYGELGKWDEVRNVWRTMKEQKSYKIPGCSWIELDDQVHQFYSLDKSNPKAEELYSVLESLIGFRNEVKVEL 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0781 534 Pfam E motif 436 495 IPR046848 -
Lal1g0781 534 Gene3D Tetratricopeptide repeat domain 345 497 IPR011990 GO:0005515
Lal1g0781 534 Gene3D Tetratricopeptide repeat domain 87 242 IPR011990 GO:0005515
Lal1g0781 534 Gene3D Tetratricopeptide repeat domain 243 344 IPR011990 GO:0005515
Lal1g0781 534 SUPERFAMILY TPR-like 176 478 IPR011990 GO:0005515
Lal1g0781 534 Pfam PPR repeat 209 234 IPR002885 -
Lal1g0781 534 Pfam PPR repeat 288 308 IPR002885 -
Lal1g0781 534 Pfam PPR repeat 390 414 IPR002885 -
Lal1g0781 534 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 283 317 IPR002885 -
Lal1g0781 534 PANTHER - 2 526 - -
Lal1g0781 534 Pfam PPR repeat 175 201 IPR002885 -
Lal1g0781 534 TIGRFAM PPR: pentatricopeptide repeat domain 353 386 IPR002885 -
Lal1g0781 534 TIGRFAM PPR: pentatricopeptide repeat domain 209 234 IPR002885 -
Lal1g0781 534 TIGRFAM PPR: pentatricopeptide repeat domain 317 351 IPR002885 -
Lal1g0781 534 TIGRFAM PPR: pentatricopeptide repeat domain 177 208 IPR002885 -
Lal1g0781 534 TIGRFAM PPR: pentatricopeptide repeat domain 391 415 IPR002885 -
Lal1g0781 534 Pfam PPR repeat family 316 362 IPR002885 -
Lal1g0781 534 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 175 209 IPR002885 -
Lal1g0781 534 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0781 Lal-Chr1 5306721 5308325 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0781 61 524 Glycoside Hydrolase AT3G49170 31.897 3.12e-89 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0781 - - gmx:100806937 835.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0781 1 5306721 5308325 Lal1g0781 1 5306721 5308325 ECH