Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0608 ATGGGAAGCAGTAGCACCAAAGCCATTTCTCCCTTCCGTCTCTCCTCCCTCCTTCGTTCCCAAAACAACCCTTCCCTCGCTTTTCAACTCTTCCTCAACCCCAACCCTCCAAATCCAAATTCAAATTCAAATGCAAATGCAGATTCAAATTCAAACACTAAAACCCAAACTCGTCCCTTCCGTTATTCCCTCCTCTCCTACGATCTGATCATAACCAAACTCGGCCGCGCCAAAATGTTCCCTGAAATGGAACAAGTCCTCCATCTCCTCCGCCACGAAACCCGCTTCAACATCCCTGAACCCCTCCTCTGCCACGTCATCTCCTTCTACGCCCACGCTCGCCTCCCCTCACGCGCCATCCACTTCTTCCACTCCATCCCTTCCTTCCCTTCCACCCGCACCGTCAAATCCTTCAACTCCCTCCTCAACGCTCTCCTCATCTCCCGCCAATTTGATAAATTCGGAGAGTTCGTGTCCCGAGTTCACGAATTCGCAATCCCAGATGCTTGCACGTTCAATATTATGATTAATGCTTGTTGTTTGAGAGGTGAATTGGATAATGCGTACGAAGTGTTTGATGAAATGCGGAAGAGAAATGTTCGACCCAATGTGGTTACTTATGGGACTTTGATTAATGGGCTATGCAAGAATTCGCGCTTGAGAGAGGCGCTTAAGCTGAAAGAGGAGATGGAAAGGGTTTTGAAGTTGAAGCCTAATGTTTTGTTGTACACGACATTGATCAAAGGTGTTTGTGAGGTTGGGAAATTTGGTTTGGCGTTTAGGTTGAAGGATGAAATGGTGAGGAACAATGTGAAGTTGGATGCTGCTGTTTATAACACTATAATCGCAGCACTTTTTAAAGGTGGGAGGAAGGAGGAGGGGCTTGGGGTTTTGAAGGAGATGAAAAAGAGCGGTTGCGAAGCCGATATAGTGACTTATAATGTATTGATTGTGGAGTTTTGTAGAGAGGAGAATTTCGAGAAAGCTTTTAAAGTTTTGGATAAGATGGAAGTTGTGAATGTGAAGGCAGATGTTGTGAGTTATAATGTAATTATTGGTGGGATGTGTAAGGTAGGGAAATGGAGTGAAGCAAATGATTTGTTTCAAGACATGGCGAGACGAGGTTGTGCTCCCGATGTTGTTACGTACCGCACACTTTTTGATGGGCTTTGTGACTCAATGCAGTTCAGGGAAGCTGCATTTGTTTTGGACGAGATGATGTTTAAAGGCTTTGTTCCACTTTCCACCGCATTGAGTAAATTTGTTCGTGGGTTGTGCAAGCATGGGGATTTCAATTTTGAATTGTTAGTAACCGTTTTGAGTGGTTTGGGTAGAGGGAATTTTTTGTACGAGGATATATGGGAAATTGTGGTTTCCAGAGTTTGCAAACCAGGGAAGCTCTTAGAACCTTTTGAGATTTTAGATACTTTGGTGATTACTCGTTTTGCGCTGAGATTTTGTTGGCTGCTGCAATCTGGAATGATAGTAACAGTTGGGCAAAATGTATGTACAGATTCTCGGGCTACTGCAAGAGTGGTGAAATGTATTCAAGAGTTTGAAAAGATTCACAAGGGCAATGAAGTTAAAAGATCACGCTGTGAAGGTGTTTATTTGCCTGCGTTCAAAAGTGTCAAAATATCATTTCTAAAGCAGGATATTAAGAATAGAAGACTGGGACGGACACAACTAAAAGATGCAATAAAAATTTGA 1710 0.4339 MGSSSTKAISPFRLSSLLRSQNNPSLAFQLFLNPNPPNPNSNSNANADSNSNTKTQTRPFRYSLLSYDLIITKLGRAKMFPEMEQVLHLLRHETRFNIPEPLLCHVISFYAHARLPSRAIHFFHSIPSFPSTRTVKSFNSLLNALLISRQFDKFGEFVSRVHEFAIPDACTFNIMINACCLRGELDNAYEVFDEMRKRNVRPNVVTYGTLINGLCKNSRLREALKLKEEMERVLKLKPNVLLYTTLIKGVCEVGKFGLAFRLKDEMVRNNVKLDAAVYNTIIAALFKGGRKEEGLGVLKEMKKSGCEADIVTYNVLIVEFCREENFEKAFKVLDKMEVVNVKADVVSYNVIIGGMCKVGKWSEANDLFQDMARRGCAPDVVTYRTLFDGLCDSMQFREAAFVLDEMMFKGFVPLSTALSKFVRGLCKHGDFNFELLVTVLSGLGRGNFLYEDIWEIVVSRVCKPGKLLEPFEILDTLVITRFALRFCWLLQSGMIVTVGQNVCTDSRATARVVKCIQEFEKIHKGNEVKRSRCEGVYLPAFKSVKISFLKQDIKNRRLGRTQLKDAIKI 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0608 569 Pfam PPR repeat family 344 392 IPR002885 -
Lal1g0608 569 Pfam PPR repeat family 167 216 IPR002885 -
Lal1g0608 569 Pfam PPR repeat family 274 322 IPR002885 -
Lal1g0608 569 Gene3D Tetratricopeptide repeat domain 233 302 IPR011990 GO:0005515
Lal1g0608 569 Gene3D Tetratricopeptide repeat domain 374 438 IPR011990 GO:0005515
Lal1g0608 569 Gene3D Tetratricopeptide repeat domain 303 373 IPR011990 GO:0005515
Lal1g0608 569 Gene3D Tetratricopeptide repeat domain 100 232 IPR011990 GO:0005515
Lal1g0608 569 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 344 378 IPR002885 -
Lal1g0608 569 PANTHER OS05G0207200 PROTEIN 5 478 - -
Lal1g0608 569 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 309 343 IPR002885 -
Lal1g0608 569 MobiDBLite consensus disorder prediction 31 55 - -
Lal1g0608 569 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 5 478 - -
Lal1g0608 569 TIGRFAM PPR: pentatricopeptide repeat domain 277 309 IPR002885 -
Lal1g0608 569 TIGRFAM PPR: pentatricopeptide repeat domain 311 344 IPR002885 -
Lal1g0608 569 TIGRFAM PPR: pentatricopeptide repeat domain 381 413 IPR002885 -
Lal1g0608 569 TIGRFAM PPR: pentatricopeptide repeat domain 170 204 IPR002885 -
Lal1g0608 569 TIGRFAM PPR: pentatricopeptide repeat domain 243 275 IPR002885 -
Lal1g0608 569 TIGRFAM PPR: pentatricopeptide repeat domain 346 380 IPR002885 -
Lal1g0608 569 TIGRFAM PPR: pentatricopeptide repeat domain 205 240 IPR002885 -
Lal1g0608 569 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 203 233 IPR002885 -
Lal1g0608 569 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 239 273 IPR002885 -
Lal1g0608 569 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 168 202 IPR002885 -
Lal1g0608 569 Pfam PPR repeat 236 267 IPR002885 -
Lal1g0608 569 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 379 413 IPR002885 -
Lal1g0608 569 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0608 Lal-Chr1 3877101 3879888 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0608 86 432 Miscellaneous Gene Families AT4G11690 28.134 1.03e-39 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0608 - - lang:109363288 864.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0608 1 3877101 3879888 Lal1g0608 1 3877101 3879888 ECH