Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0571 ATGCATTCTGGGAACACTTTTCATCACTTGGACCCTGATGTTATTGAAATTCCAACCCCAATTACTCACAACCCTGCTAAACAGAAAGAGGCCATTTTTCATGATGTGATCGACATTGACAACGATGATGACTCTATGGATTTAGCGTTAAATGATGAAAAGGCTGGTATAAGTAACAAGGGGAAGAAAATTGAAGGTGTTTATGATGGTTATGGTGATCATCAAGTTATGGACATGTTTAATGAGAAATTTCATCTGCCTGTTATGGAAAAATCTGAACCAGGTAGCGGGATTGAGTCTTCCAATGGTTATACTTCAGCAGCATATAATTTAAACACTGTTGATGACCATGGTTCTGACCAATCATGTGATGAAGATGACTACAGTGATCTTTTTTCGGATGATTATATGGACGTGGATGATTACGCTTTATTACAGGCACATTTTGATAATGTGGATATACCTCCTGGAATTGAGGCACCCATTCCTTGGTTGGCAGAGTATGCTTTAGGTTCAAAGAAGACTGGAGGTAGCTCCTTGTATCCTTCGGGTATTATTCAGTCTGATGCTAAAAATTCTCGTGTAACAAACTTACCACCAACTCCATGGTCATTAGAACCTACTTACCCTTCCGTCCAAGAACCTTCAGTGGGTAGTTCTAGTTTACAAATCAAAACGAACTCTGTTGGCCATCCTTCCGAAATAGAGTTATCTTCTGCTCCGTTATTTTCTCAAATTGTCCCAAGTAGGAAGAAATCAGATGCCTATCAATGCAGGAGGCGTAAGTTTAAGTTTTCATTAGGAGAGTCTTCTAAATCTCATTTGCATTTGGGACCTTCTGAGGGTAAAAAGAAGCATAATGTTTTTGATGCTTTAAATAGCCATGAATTGATACACAATTCAAAGACTATAAAGCTATATGGAGGTGTGTCTCCATATTGGGGACAATCTGCAAGTGCAAAAAAGGCAGGTGGAAGTAGTGGGTCACATAATTCAAATTTCGTTGGACCTGAAATTGGGTCATTGTATCCTCCAGGAATTGATGTAACAAATCCTTTGTGGTTGAAGAGCCCCCAGCCATTTCCTAATTCTAGTTTTTTCTATCATGCCTCTCCTCCTCTTGAGCAATTGTTTGATAATACTTGGGTTCACAATGGATCTGCTACTGATAATACTGTTGTGATAATCTCTGATGAAGCAAGAGATGAAATTCAGAGGAAATTCGGAAATTTTAAACAGTTTGACACTGTTGAAGACACTTCAGACCATTACTTTGTTCATGTTGATCCTTCCAAGAAGCAGCATTCTAAGAATTGGGCTAAAAGAATCCAGGAAGAGTGGAAGTCATTGGAGAAGGATTTGCCTGACTCAATATTTGTCAGAGTTTATGAATCAAGGATAGATCTTTTGCGGGCTGTGATTATTGGAGCTCAGGGAACTCCTTATCATGACGGTCTTTTCTTTTTTGATGTTTTGTTACCCAGTGGCTATCCTAATGTACCCCCGCATGTCCAGTACAACTCTGGTGGCCTTCGGCTGAACCCAAATTTATATAATTGTGGCAAAGTATGCCTTAGTCTACTCAATACCTGGTCTGGCAGTAAGAATGAGAAGTGGCTTCCTGGTGTTTCAACAATTTTACAGGTTCTAGTCTCTATACAAGGTCTAATCTTGAATGCAAAGCCTTACTTTAATGAGCCTGGATTTGCACGTTCGAACGGTTCAGCAAGTGGTGAAACGAAGTCCCTGCGGTATAATGAGGATATATTTGTCCTATCATTGAGAACAATGGTGTATACGATTAGGAATCCTCCAAAGAATTTTGAGGAATTTGTTGTCGGCCACTTCTGCAGCCGCGCACATGATATTCTGATAGCGTGTAAAGCATACATGGATGGAACTCAAGTTGGCTGTTTGGTCAAAGGCGGGGTTCAGGATGTTGATCAAGGTGACAGGAGCTGCTCGAAGCAGTTCAAGAATTCTTTAGCTGGGTATGTGAATATGCTTGTTAAGGAGTTTACGAGAACCGGAGCTAAGGACTGTGACAAATTCTTGTCGAATTTAACAACAGCCGGGAACAAGCCGCTGGGTCAATTGCGTGAGGCTGCTGCTCCATTTTCTTGA 2124 0.4054 MHSGNTFHHLDPDVIEIPTPITHNPAKQKEAIFHDVIDIDNDDDSMDLALNDEKAGISNKGKKIEGVYDGYGDHQVMDMFNEKFHLPVMEKSEPGSGIESSNGYTSAAYNLNTVDDHGSDQSCDEDDYSDLFSDDYMDVDDYALLQAHFDNVDIPPGIEAPIPWLAEYALGSKKTGGSSLYPSGIIQSDAKNSRVTNLPPTPWSLEPTYPSVQEPSVGSSSLQIKTNSVGHPSEIELSSAPLFSQIVPSRKKSDAYQCRRRKFKFSLGESSKSHLHLGPSEGKKKHNVFDALNSHELIHNSKTIKLYGGVSPYWGQSASAKKAGGSSGSHNSNFVGPEIGSLYPPGIDVTNPLWLKSPQPFPNSSFFYHASPPLEQLFDNTWVHNGSATDNTVVIISDEARDEIQRKFGNFKQFDTVEDTSDHYFVHVDPSKKQHSKNWAKRIQEEWKSLEKDLPDSIFVRVYESRIDLLRAVIIGAQGTPYHDGLFFFDVLLPSGYPNVPPHVQYNSGGLRLNPNLYNCGKVCLSLLNTWSGSKNEKWLPGVSTILQVLVSIQGLILNAKPYFNEPGFARSNGSASGETKSLRYNEDIFVLSLRTMVYTIRNPPKNFEEFVVGHFCSRAHDILIACKAYMDGTQVGCLVKGGVQDVDQGDRSCSKQFKNSLAGYVNMLVKEFTRTGAKDCDKFLSNLTTAGNKPLGQLREAAAPFS 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0571 707 CDD UBCc 441 587 IPR000608 -
Lal1g0571 707 Gene3D Ubiquitin Conjugating Enzyme 399 679 IPR016135 -
Lal1g0571 707 Pfam Ubiquitin-conjugating enzyme 442 562 IPR000608 -
Lal1g0571 707 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 39-RELATED 22 687 - -
Lal1g0571 707 CDD FERM_B-lobe 404 451 IPR019748 -
Lal1g0571 707 SMART ubc_7 441 598 - -
Lal1g0571 707 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 438 598 IPR000608 -
Lal1g0571 707 SUPERFAMILY UBC-like 430 605 IPR016135 -
Lal1g0571 707 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 22 687 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0571 Lal-Chr1 3666139 3672729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0571 398 681 Miscellaneous Gene Families AT2G33770 49.301 2.83e-82 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0571 K10581 - gmx:100809853 735.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0571 1 3666139 3672729 Lal1g0571 1 3666139 3672729 ECH