Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0566 ATGGCGTCCACAATGGTACACAAGTCTCGAAACTTCATTTCAACATTTCTGGTTGGTAGATCATACTGCTCCACACCCAACCGAAAAAACCTGTACTCTAGAATCAGTCCTCTTGGAGACCCTTCCATAAGCTTAGTTCCTGTTCTTGACAACTGGCTCCAACAAGGTAACACCGTTTACCCCTTCGATCTTCAGCGCATCATCAAAAATCTTCGTTCTCGTAGGCGTTTCAGTCAAGCCCTTCAGGTGTCTGAATGGATGAGTAGCAAGGGACTATGTCCAATTTCAGCAGGTGATAAAGCTGTGCAACTGGATCTTATTGGTAAAGTACGCGGACTGGATATTGCAGAGAGCTATTTTCAGAATCTGAGTGAGAATGATAAAACTGATAAGCTTCATGGTGCTCTTTTGAATTGTTATGTGAGGGAAGGCTTAGTTGATAAGTCACTCTCCCTTATGCAGAAGATGAAAGATATGGGTTTTTTGTCTGCTCTCAACTACAATAGTATTATGTGCCTCTATACACAAACTGATCAACTTGAGAAAGTCCCTGGTGTTATGAAACTAATGAAAGAGGATGGGGTCTCTCCTGACATTTTCAGCTATAGGATTTGCATAAACTCTTACGGTGCAAGATCTGACCTAGTGAATATGGAGAAACTACTGGACGAAATGGAAAGTCAAAGCTATATTGTCACAGATTGGGACACATATTCTATGGTGGCTAACTTCTACATAAAAGCAGGTCTGAAGGAGAAAGCTCTGATCTGCCTGAAGAAGTGTGAAGATAAGGCGGACAAACGCAATGCGCTTGCCTACAATTATCTTATTTCACAATATGCTAGTCTTGGGAACAAAAAAACCATGATGAGACTTTGGGAACACCAGAAAGCCAACTGCAAGAAGCAACTTAACAGGGAATATATAACCATGTTGAGTTGTCTGGTGAAGGTAGGGGAGTTTGATCAAGCTGAAAAAGTGCTTGAAGAGTGGGAGTTATCAGGTAACTATTATGATTTCAGAGTGCCGAACACTGTCCTGATTGGTTATTCTCAGAGAGGATTGGTTGAAAAGGCAGAAGCACTGCTACTACGCATTGTCGAGAAAGGGAAGATGCCAATTCCTAACAGTTGGTCTATTATTACATCTGGGTATGTGGTTGAGGAGAACATGGAGAAGGCATTTCAGTGCATGAAGAAAGCTGTGGCTGTACGAGACCAGAATAAAGGTTGGAGACCAAAAGATAATATCATTTCCAGCATATTGAGTTGGGCCGCTGATAACAAAGACGTGGATGAAGTAGAAGATTTTGTCAATTCATTAAAGATCGTGACTTCAATGAATAAGAACATGTATCTGTTTTTGATCAAGGTATATGTTAGATGTGGGAAAGAAGTTGATGGGATTTTAGAGAGTATGAAAGCTGATGAAATAGAGCTTGATGAAGATATAGAGGAAATCCTTAGCTCAAGATCACAATAA 1482 0.4069 MASTMVHKSRNFISTFLVGRSYCSTPNRKNLYSRISPLGDPSISLVPVLDNWLQQGNTVYPFDLQRIIKNLRSRRRFSQALQVSEWMSSKGLCPISAGDKAVQLDLIGKVRGLDIAESYFQNLSENDKTDKLHGALLNCYVREGLVDKSLSLMQKMKDMGFLSALNYNSIMCLYTQTDQLEKVPGVMKLMKEDGVSPDIFSYRICINSYGARSDLVNMEKLLDEMESQSYIVTDWDTYSMVANFYIKAGLKEKALICLKKCEDKADKRNALAYNYLISQYASLGNKKTMMRLWEHQKANCKKQLNREYITMLSCLVKVGEFDQAEKVLEEWELSGNYYDFRVPNTVLIGYSQRGLVEKAEALLLRIVEKGKMPIPNSWSIITSGYVVEENMEKAFQCMKKAVAVRDQNKGWRPKDNIISSILSWAADNKDVDEVEDFVNSLKIVTSMNKNMYLFLIKVYVRCGKEVDGILESMKADEIELDEDIEEILSSRSQ 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0566 493 Pfam Pentatricopeptide repeat domain 151 211 IPR002885 -
Lal1g0566 493 Gene3D Tetratricopeptide repeat domain 164 231 IPR011990 GO:0005515
Lal1g0566 493 Gene3D Tetratricopeptide repeat domain 42 163 IPR011990 GO:0005515
Lal1g0566 493 SUPERFAMILY HCP-like 197 405 - -
Lal1g0566 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 339 373 IPR002885 -
Lal1g0566 493 TIGRFAM PPR: pentatricopeptide repeat domain 133 161 IPR002885 -
Lal1g0566 493 TIGRFAM PPR: pentatricopeptide repeat domain 308 335 IPR002885 -
Lal1g0566 493 TIGRFAM PPR: pentatricopeptide repeat domain 167 199 IPR002885 -
Lal1g0566 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 129 163 IPR002885 -
Lal1g0566 493 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 22 492 - -
Lal1g0566 493 Pfam PPR repeat 308 335 IPR002885 -
Lal1g0566 493 Pfam PPR repeat 344 370 IPR002885 -
Lal1g0566 493 PANTHER OS12G0527900 PROTEIN 22 492 - -
Lal1g0566 493 Gene3D Tetratricopeptide repeat domain 244 436 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0566 Lal-Chr1 3645717 3648397 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0566 31 458 EF-hand Containing Proteins AT1G02150 35.581 1.70e-85 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0566 - - lja:Lj0g3v0287449.2 716.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0566 1 3645717 3648397 Lal1g0566 1 3645717 3648397 ECH