Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0534 ATGTGGAGAGATCCTGGAGCTCCTGCTGATTCTTTCTATGAAGTCCGTCCTGAGTGCAATGATGTTCCCAAGTCTCGCTTTAGGATCAAGGTTGGTAAGACACTAAGTGCAAGAAAGTGGCATGCTGCCTTTTCTCCAGAAGGGTATCTGGATATAGGCAAGACTCTAAGCCGAATCCATCGAGGGGGAATTCATCCATCAATTAGAGGAGAAGTTTGGGAATTTCTACTTGGTTGCTATGATCCCAAGAGTACTTTTGAGGAAAGAACTGAGATAAGGCAACAACGAAGGTTGAAATATGCTGCATTGAAAGAAGAATGCCGCCAATTGTTTCCTCTTGTGGGAAGTGGTAAATTTATCACAGCACCTGTAATTACTGAAAATGGTGTACCAATTCATGATCCATTGGTTCTTTTAGAAACAAATACAGACAATGGAGTGATTGCACCACCACAAGATAATAATGCAGGCGGTACCATGGGGCCTTCAAGCACCGGAGCTAACGTAGAAAAGGTGACAGACAAGAGAGTAATCCAGTGGATGTTAACTCTTCATCAAATAGGTCTTGACGTTAATCGCACTGATAGGACACTGGTTTTTTATGAGAAGAAAGAGAACTTGTCAAAACTCTGGGATATTCTTGCTGTTTATGCTCAGGTAGATACAGATGTTGGCTATGGTCAAGGAATGAGTGATCTATGCTCCCCTATGATAATACTTCTTAATGATGAAGCTGATGCATTTTGGTGCTTTGAGCGTTTGATGCGCAGACTGCGAGGAAATTTCAGATGCACTGATAGCTCTGTTGGGGTGGAGACTCAACTAACTAATTTAGCATTGATTACTCAAGTAATTGATCCAAAACTTCATGAACATTTAGAGCATCTTGGAGGAGGTGACTATCTTTTCGCTTTTCGGATGCTAATGGTTCTTTTTCGTCGAGAATTCTCCTTTTGTGACTCATTGTACCTTTGGGAGATGATGTGGGCTCTTGAATATGATCCGGACTTGTTCAATCTGTATGAAGATACCGACGATGAAAAATCTGAGGAATCTAAAGGAAGGTTAAAATCAATACGTCATTATGGGAAGTTCGAGAGAGAAAACATGAGAAATGGAGCAAAGAATGCTGAAGAAGCTCCTCTTCCCATATCTGTTTTCCTTGTTGCTAGTGTGTTGAAAGAAAAAAGTGCTATACTACTTCAGCAAGCGCGAGGCCTCGATGATGTTGTCAAGATATTGAATGATGTAAATGGAAATCTAGATGCCAAAAAAGCTTGCATTTCAGCACTAAAACTTCACAAGAAATATTTGAAAAAGGCCAAGAAACCTTAG 1335 0.4067 MWRDPGAPADSFYEVRPECNDVPKSRFRIKVGKTLSARKWHAAFSPEGYLDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYDPKSTFEERTEIRQQRRLKYAALKEECRQLFPLVGSGKFITAPVITENGVPIHDPLVLLETNTDNGVIAPPQDNNAGGTMGPSSTGANVEKVTDKRVIQWMLTLHQIGLDVNRTDRTLVFYEKKENLSKLWDILAVYAQVDTDVGYGQGMSDLCSPMIILLNDEADAFWCFERLMRRLRGNFRCTDSSVGVETQLTNLALITQVIDPKLHEHLEHLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPDLFNLYEDTDDEKSEESKGRLKSIRHYGKFERENMRNGAKNAEEAPLPISVFLVASVLKEKSAILLQQARGLDDVVKILNDVNGNLDAKKACISALKLHKKYLKKAKKP 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0534 444 Pfam Rab-GTPase-TBC domain 169 330 IPR000195 -
Lal1g0534 444 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 1 444 - -
Lal1g0534 444 PANTHER RAB-GTPASE-TBC DOMAIN-CONTAINING PROTEIN-RELATED 1 444 - -
Lal1g0534 444 SMART tbc_4 60 355 IPR000195 -
Lal1g0534 444 Gene3D - 268 443 - -
Lal1g0534 444 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 167 262 - -
Lal1g0534 444 ProSiteProfiles TBC/rab GAP domain profile. 63 332 IPR000195 -
Lal1g0534 444 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 270 437 IPR035969 -
Lal1g0534 444 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 39 292 IPR035969 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0534 Lal-Chr1 3436711 3442745 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0534 - - gmx:100782079 730.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0534 1 3436711 3442745 Lal1g0534 1 3436711 3442745 ECH