Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0442 ATGGGTGTTCCATCATTTTATAGATGGTTAATAAACAAGTATCCAAATGTGGCAGTGAGAGCCAAAGAAGATATTAACACTGATATTAACATGCCAAACCCAAATGGCTTTGAGTTTGATAACTTGTACCTAGACATGAATGGGATTATTCACCCATGTTTCCACCCTGAGGGTGACAATAGTTCACCTCCCACAACAATTGAAGAGGTGAAAAAGAACATTTTTAACTATATTGATCGACTTGTTAACATAGTTAGGCCTCGCAAGCTCTTATACATGGCTATTGATGGAGTAGCACCACGGGCCAAAATGAATCAACAGAGATCAAGGCGTTTCAGTAGTGCAAAGGAAAGCTCCATCCGTGAATTTGAGGAAGATAAGCTCAGAAAGCAATTTGAAAGAGAAGGAATACAAGTACTTCCAAAGCAAGAATCAGAATTATCAGATTCAAATATTATCACACCAGGCACAGAGTTCATGCATGAACTCTCTAACGCCCTTCAAAGCTACATATCTTCAAGGATAATGTCTAATTCATGGAAGGATATTATGGTAATTCTCTCTGATGCTAATGTTCCTGGAGAAGGGGAACATAAGATTATGTCTTACATACGCGCACAGCGTAACGTTCCTAATTATGATCCAAACACTAGACATTGCTTATATGGCTTGGATGCTGATCTTATAATGCTGGCTTTGGCAACTCATGAGCCACACTTTTCAATACTCAGAGATGTTGTAACAGAACAACCACAAGTGGGTATTAAGCTTTTTGAGTTTTTGCACGTATGGCTATTGCGGGAATATCTTGAATTGGATATGAAGATAGAAGATCCTCCTGAGAACTTCAAATTTGATTTTGAGAGGATTATTGATGATCTTGTATTCATGTGCTTCTTTGCTGGAAATGATTTTTTGCCTAAAATGCCGACTTTGGAAATTAATGAGGGGGCTATTGATTTACTAATGACTGTTTATAAGAAAGAATTCAAGAAACTTGGTGGATATCTTGTTGACATGAGCAAGGTTGGGGAGAAGAAGTTTGCTTTTGTTAAGTTGTCAAGAGCTGAAAAGTTTATTCTTATGGTTGGTACATATGAAGAGCAAATTTTTCGGAGAAGATCGGAAATAAGAGAGCGAAAATTGAGAAGGCTCATTCGTGATCATGAGAATTCTGGACAGGAGAAGGAACATTGTTTCTCACTTGATGATAATGAAAGTAGTTCAGATTGTGCTCTTGTCATTAAGAAGGGTGCTGCTTCTAAAAACTTATCTCCTTCATATGATGAGCTTTTTCAGAACACGAAGTATCTCAAAGAATTACTGAACACATGCATAAGACAACAAAATGACCTTTTTAAGAGTGGAAAATTCCCAAACGACAAGGTAAAATTTGGCACTCCCGGGTGGAGACAAAGATACTATAAAGAGAAGTTTTCAGTGGAAGGTTCCATTGACATTGAGTCCAAAAGGAAAGAAATAGCCCAGAAGTACACAGAAGGACTTTTGTGGGTTCTACAATACTATTATTCAGGTGTCCCTTCCTGGACATGGTTTTATCCATACAATTATGGTCCTTTTGCTTCAGACTTAAAGGGCATGGGCCAGGTTAGAGTAAATTTTAAGGAAGGGAAACCTTTCTTACCTTTTGATCAACTCTTAAGTGTCCTGCCTCCTAGCAGTGCTCATGCACTTCCAAGTGCATATTCTCAATTGATGCTAAGTGAGGAATCAAACATATTGGACTTTTATCCTCTTGATTTTGAATTTGACACAGAAGGAAAGCAGTTTATGTGGCAGTGTATCTGCAAACTTCCATTCATTGATGAAGCACGGCTTTTGGCTGAAACCAGAGAACTCCATAAGGGTTTATCTAAAAATGAAGCAAGTAGAAATTCAGTCAAGGTTGATACCTTGATTCTTAGAAGAAATAGTATCGTAGCTGAAAAACTTTCCTCTCTTTCTCAAGAACCAAATCCATATTTCAAGTCAACTACATGCAGAGGTGATGACAATGGGTGTATCATAAGTCTCTGCCATGAGTGTGTTGGAAAGCCTTGCTTGCAGTTGAATCTTTTTGACAACTTACAAGAAGATTATGTCCCATGTCTATGTTTCAATCTTCCTCGTGGAAGTTCTCAAGTTCCTCGTTTATTATCCGGTGTAAAGCTTCCAGAAAAGATAATTTCTGATGGTGACATCATGGAAACAATATTGTGGCATGAAAAAGAAACGAGGTATAAAAGCAGGAATTATAACAGTCACTGGGGTGCTCAAAAGCTTTATCCAATGGCAGTAAATCCAGTTAGAAAATTTTCATCAAATTCATTCTCTGAAGTCCTTCACAAAGATGCTGGTATTGGATGGGGTTCTGGCAGAGGGAAGACATATAACAATAGTAATATGAGAAGAACTGATATGGTTCAAAATGAGAGAGTATCATTCTGGTCTAATTCACTTAATCAGCATGAAGATTCTGGATGTTATAATGTTAATGCAATAAGAGATAGAAGATGTCAGGCTTTTGTTGACAACTTTAGGCCAATAAGGCCTAATCAGTCAAGCAATGTCTCTCATCGAGGTTCATATTCTAGGCCCTTGCTTTATGGTAGAGGTCAGCATGGTTCTAATATCTCATTGAGTACTCAAAGTAGTGGTTCCAAGATTTGGCATGTCAAGGATCAGAATCGTTGGTAA 2697 0.3786 MGVPSFYRWLINKYPNVAVRAKEDINTDINMPNPNGFEFDNLYLDMNGIIHPCFHPEGDNSSPPTTIEEVKKNIFNYIDRLVNIVRPRKLLYMAIDGVAPRAKMNQQRSRRFSSAKESSIREFEEDKLRKQFEREGIQVLPKQESELSDSNIITPGTEFMHELSNALQSYISSRIMSNSWKDIMVILSDANVPGEGEHKIMSYIRAQRNVPNYDPNTRHCLYGLDADLIMLALATHEPHFSILRDVVTEQPQVGIKLFEFLHVWLLREYLELDMKIEDPPENFKFDFERIIDDLVFMCFFAGNDFLPKMPTLEINEGAIDLLMTVYKKEFKKLGGYLVDMSKVGEKKFAFVKLSRAEKFILMVGTYEEQIFRRRSEIRERKLRRLIRDHENSGQEKEHCFSLDDNESSSDCALVIKKGAASKNLSPSYDELFQNTKYLKELLNTCIRQQNDLFKSGKFPNDKVKFGTPGWRQRYYKEKFSVEGSIDIESKRKEIAQKYTEGLLWVLQYYYSGVPSWTWFYPYNYGPFASDLKGMGQVRVNFKEGKPFLPFDQLLSVLPPSSAHALPSAYSQLMLSEESNILDFYPLDFEFDTEGKQFMWQCICKLPFIDEARLLAETRELHKGLSKNEASRNSVKVDTLILRRNSIVAEKLSSLSQEPNPYFKSTTCRGDDNGCIISLCHECVGKPCLQLNLFDNLQEDYVPCLCFNLPRGSSQVPRLLSGVKLPEKIISDGDIMETILWHEKETRYKSRNYNSHWGAQKLYPMAVNPVRKFSSNSFSEVLHKDAGIGWGSGRGKTYNNSNMRRTDMVQNERVSFWSNSLNQHEDSGCYNVNAIRDRRCQAFVDNFRPIRPNQSSNVSHRGSYSRPLLYGRGQHGSNISLSTQSSGSKIWHVKDQNRW 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0442 898 PIRSF Exonuclease_Xrn2 248 896 IPR017151 GO:0004534|GO:0005634|GO:0006139
Lal1g0442 898 PIRSF Exonuclease_Xrn2 1 255 IPR017151 GO:0004534|GO:0005634|GO:0006139
Lal1g0442 898 Gene3D - 535 634 - -
Lal1g0442 898 PANTHER OS11G0157000 PROTEIN 1 780 - -
Lal1g0442 898 CDD PIN_XRN1-2-like 42 270 - -
Lal1g0442 898 PANTHER 5'->3' EXORIBONUCLEASE 1 780 IPR027073 -
Lal1g0442 898 Gene3D - 141 349 - -
Lal1g0442 898 Pfam XRN 5'-3' exonuclease N-terminus 1 245 IPR004859 GO:0003676|GO:0004527
Lal1g0442 898 Pfam Xrn1 helical domain 284 734 IPR041412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0442 Lal-Chr1 2744561 2749942 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0442 - - gsj:114379404 1001.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0442 1 2744561 2749942 Lal1g0442 1 2744561 2749942 ECH