Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0351 ATGAATCGAGCAAGACCCGAAGGCATAACATTCACGAAGGAACCCTACATCGAGGACTCAGGCCCAAGAAGGATTGAAAGCATGAAGTTCTCAACGTTATCAGACTCAGAGATAGGAAAAATAGCTGAAGTTCAAGTTTGGAAAGGTCAATATTATGATCAATTCAAGAAACCTATCCCTTCTGGTTTATTGGATCCACGCATGGGACCTGCGAATAAGAATGTTACTTGTACAACATGCTATGCTCAATTTAAAGATTGTCCTGGTCACTACGGTTATATCAAACTTTCGCTTCCCGTTTTCAACGTTGGATACTTAGGTGCCGTTGTTGAAATACTCAAGTGCATTTGTAAGGGATGTGCTCGAATTCTCCTCAATGAAGATACTCGTAAAGAACGTTTGAGGAAAATGAGAAGCCCTAGAATTGAGGCAGATATGAAGATTGGCTTAGCAAAAAAGGTTATAGAGAAATGTAACAAAGCAACCAAGTGCCTGAGATGCGGATACGTTAATGGTACGGTGAAGAAGGCTGTGTCTGCAATAAGAATTGTCCATGATCGTTCAAAATGTAATGATAGTAGTGTTGAAGAGTATCGATCAGCACTTTCTCATACAAGAGAGCCTAAGGCGATCATTAACTCAGATACTCAAATTCTTGACCCTTTCCAAGTTCTCTCTCTGTTTAAAAGGATGCATGATGAGGACCTTGAATTAATTTATCTCGCTGAAAGACCGGAGAAACTCATTATAACAAACATTGCTGTGCCGCCTATAGCTATTCGACCTTCAGTTATAATGGATGGATCACAGAGTAATGAAAATGACATAACAGAGAGGCTAAAGCTAATAATCCAAGCAAATGCTGTTCTACGCCAAGAATTAGAGGAATCAAGTGGTTCATCCAAATCTTTGGATGGTTGGGAAATGCTCCAAGCTGAGGTTGCTCGATTTATAAATAGTGATGTTCGTGGTGTACCATTCAATATGCAAATGCAAAAGGGCAAGACATTAGCTGGCTTTATTCAGCGCCTTAAAGGGAAGCAGGGGCGTTTCCGTGGCAACTTATCTGGGAAACGTGTGGAATTTACTGGCAGGACAGTTATTTCACCGGATCCAAATCTAAGGATTTCCGAGGTTGCAATACCCATCCATATGGCTACTATATTGTCATATCCTGAGCGTGTTTCGCGTCATAACATAGAGAAGTTGAGACAATGTGTGAGAAATGGTCCAGACAAGTATCCTGGTGCAAGGATGCTTAGACATGCAGATGGTAGCTCATGGTCCCTACACCATTCTGCAAGAAGAAAGCGCTTTGCAGATGAACTGAGATTTGGTGATATTGTTGATCGCCATTTGGAAGATGGAGACATTGTTCTTTTCAATAGACAGCCAAGTTTGCATCGAATGTCTATAATGTGTCACAGGGCAAGGATTATGCCTTGGAGGACTTTGAGATTCAATGAATCTGTATGTAACCCATATAATGCTGACTTTGATGGTGATGAGATGAACTTACATGTTCCACAGACTGAGGAGGCTCGAACAGAAGCTATTTTGTTAATGGGGGTGCAAAACAATTTGTGCACACCAAAAAATGGCGAAATTCTGGTTGCCTCTACTCAAGATTTTTTAACTTCTTCCTTTCTCATAACTAGGAAAGATAATTTTTATGATCGTTCTACTTTTTCACTTATCTGCTCATACATGGGTGATGGCATGGATGTTGTTGATCTGCCAACTCCTGCAATTATTAAGCCAGTTGAGCTATGGAGCGGTAAACAGTTATTTAGCATTCTATTACGCCCACATGCAAATGTGAGAGTTTATGTGAATCTTACTGTTAAAGAGAAAATATACAGCACGAAGCGTGATGACAAGAAAAGAGAATGGAAAACAATGTGCCCGAATGATGGGTTCGTCTATTTTCGCAATAGTGAATTGATCTCTGGACAACTTGGAAAGGTGACTTTAGGAAATGGTAATAAGGATGGTCTTTTCTCTGTTCTACTAAGAGACTATAAAGCACATGCTGCTGCTTCTTGCATGAATCGTCTAGCTAAATTCAGTGCTCGGTGGATAGGGAATCATGGGTTCTCGATAGGAATTGATGACGTTCAACCTAAAGTGGAATTGGTCAACAAGAAAGATATAACAATTTCAAATGGTTATGGAAAATGTGATAGATTTATTGAAGATTTCAATAAAGGAAAGTTAAGCCTCAAACCTGGTTGTGATGCTGCTCAAACATTGGAGCACGAGATAAAGGGTGTCTTAAATGGTTTACGAGATGAAGCAGGAAAGATTTGCATGCAAACTCTACACTGGAGAAATAGTCCGTTGATCATGTCACAGTGTGGCTCCAAGGGATCTCCTATTAATATCAGTCAGATGGTTGCCTGTGTTGGTCAGCAATCAGTTGGAGGTCAACGTGCTCCTAATGGGTTCATGGAACGGAGCCTTCCCCATTTCCCTAGAAATACAAAAACTCCTGGTGCTAAAGGTTTTGTTGCTAATTCCTTTTACACGGGATTGTCAGCTACTGAGTTTTTCTTCCACACAATGGGAGGGCGAGAAGGGCTTGTTGATACAGCGGTTAAAACTGCAGATACTGGATATATGTCTCGTAGATTAATGAAGTCTCTAGAGGATTTGTTTTTACATTATGATTCCACTGTAAGAAGTGCTAGTAATAGTATTGTTCAATTTTGTTATGGAGATGATGGCATGGATCCAGCTGGCATGGAAGGAAAAGATGGAAAACCATTAAATTTTGAGCGATTGTTTCTTAAAAGCAAGGCCATATGTCCCAGTGATGGAGATGATGGTATCTTGTCTTCCTCGGAAGTGTATAAAGTACTACAAAAGAAGCTTTCGGAAGTTGGTATGTCTAAGTTATTAGGAAATGGGGTTTCAGAGGATAGTGAAATGTCAGAAGTGGCCTCCTCTGCTGGCTTCATAAATTCTCTACAGTCTTTTATCAAAGATAAGACAGAATTTACAAAAGATACTTCCATCGATGGTGATTCTAAAGATCTGAGAAAGTTTATTCAGAGGATATCTGGGATCACTCGTAGACAATTGGAGGTTTTTCTGGATGTTTGTCTATCACGTTACAGTTCTAAGAAAATAGAGTCCGGAACTCCAATTGGCGCTATTGGAGCTCATAGTATTGGAGAACCTGGGACCCAAATGACTCTGAAAACTTTTCATTTTGCTGGGGTTGCAAGCATGAATGTTACTCTTGGAGTTCCTCGCATAAAGGAAATTATTAATGCTTCCAAAAACATTAGTACACCAATCATCACTGCAATACTTGATAAAGATGATAATTTACATACTGCAAGGATAGTAAAGGGGCGCATTGAAAAAACAAATTTAGGCCAGGTTGCAAAGAGTATTAAAGTTGTTATGAGTTCAAGATCAGCATCAGTTGTTATCACACTTGACATGAAAAGAATCCAAGATGCGTATCTGAATATAGATGCTAATATTGTTAAAGAATCCATTTTGCAAGCTAAAAAAATAAAATTGAAGCAAGAGCACATTAAGGTTTTGGATATCAAAAAGCTTGAAGTTGTTCCCCAGGATGCTGATAGAAGTAAAATCCATTTTCAACTGAACTATCTCAAAAATTTGCTTCCATCAGTTGTAGTGAAGGGAATTAAAACTGCTGAACGTGTTGTTATCAGTAAAGAAGAAGATAAAGAGACGAAGGCTGATAAGTTCAACTTACTGGTGGAAGGAACGGGCCTTAGAGAGGTAATGGGAATTGAAGGGGTTGATGGACGTAAAACTGTTAGTAATCATATCGATGAAGTGGAAAAGGTTCTAGGAATCGAAGCTACTAGAAATCGTATTATTCATGAGATACAGTATACAATGGGAAGTCATGGAATGAGTATAGACATACGCCATATGATGCTGCTAGCAGATATAATGACCGCCAGGGGTAAAGTCCTCGGAATAACAAGATTTGGAATTCAACAAATGGGCAAAAGTGTATTAATGCTTGCATCATTTGAGAAGACATCAGATCATCTTTTCAACGCATCCGTGCATGGGAGGGATGACATGGTTGAAGGAGTAAGTGAATGCATTATCATGGGTATACCTATTCCGATTGGCACTGGTATAATCAAGATCAAACAAAGGTTGGATCTTCCGGAGTTGCCTCAAGGAACCGATCCTATTCTATCTTAA 4203 0.3947 MNRARPEGITFTKEPYIEDSGPRRIESMKFSTLSDSEIGKIAEVQVWKGQYYDQFKKPIPSGLLDPRMGPANKNVTCTTCYAQFKDCPGHYGYIKLSLPVFNVGYLGAVVEILKCICKGCARILLNEDTRKERLRKMRSPRIEADMKIGLAKKVIEKCNKATKCLRCGYVNGTVKKAVSAIRIVHDRSKCNDSSVEEYRSALSHTREPKAIINSDTQILDPFQVLSLFKRMHDEDLELIYLAERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKLIIQANAVLRQELEESSGSSKSLDGWEMLQAEVARFINSDVRGVPFNMQMQKGKTLAGFIQRLKGKQGRFRGNLSGKRVEFTGRTVISPDPNLRISEVAIPIHMATILSYPERVSRHNIEKLRQCVRNGPDKYPGARMLRHADGSSWSLHHSARRKRFADELRFGDIVDRHLEDGDIVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEAILLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDNFYDRSTFSLICSYMGDGMDVVDLPTPAIIKPVELWSGKQLFSILLRPHANVRVYVNLTVKEKIYSTKRDDKKREWKTMCPNDGFVYFRNSELISGQLGKVTLGNGNKDGLFSVLLRDYKAHAAASCMNRLAKFSARWIGNHGFSIGIDDVQPKVELVNKKDITISNGYGKCDRFIEDFNKGKLSLKPGCDAAQTLEHEIKGVLNGLRDEAGKICMQTLHWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGQRAPNGFMERSLPHFPRNTKTPGAKGFVANSFYTGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKSLEDLFLHYDSTVRSASNSIVQFCYGDDGMDPAGMEGKDGKPLNFERLFLKSKAICPSDGDDGILSSSEVYKVLQKKLSEVGMSKLLGNGVSEDSEMSEVASSAGFINSLQSFIKDKTEFTKDTSIDGDSKDLRKFIQRISGITRRQLEVFLDVCLSRYSSKKIESGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKNISTPIITAILDKDDNLHTARIVKGRIEKTNLGQVAKSIKVVMSSRSASVVITLDMKRIQDAYLNIDANIVKESILQAKKIKLKQEHIKVLDIKKLEVVPQDADRSKIHFQLNYLKNLLPSVVVKGIKTAERVVISKEEDKETKADKFNLLVEGTGLREVMGIEGVDGRKTVSNHIDEVEKVLGIEATRNRIIHEIQYTMGSHGMSIDIRHMMLLADIMTARGKVLGITRFGIQQMGKSVLMLASFEKTSDHLFNASVHGRDDMVEGVSECIIMGIPIPIGTGIIKIKQRLDLPELPQGTDPILS 1400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0351 1400 SMART rpolaneu7 246 552 IPR006592 GO:0003677|GO:0003899|GO:0006351
Lal1g0351 1400 CDD RNAP_III_Rpc1_C 1038 1366 IPR035698 -
Lal1g0351 1400 Gene3D RNA polymerase II, clamp domain 15 139 IPR044893 -
Lal1g0351 1400 Gene3D - 1335 1380 - -
Lal1g0351 1400 PANTHER DNA-DIRECTED RNA POLYMERASE 12 1386 IPR045867 GO:0003899|GO:0006351
Lal1g0351 1400 Gene3D - 348 531 - -
Lal1g0351 1400 Pfam RNA polymerase Rpb1, domain 2 357 524 IPR000722 GO:0003677|GO:0003899|GO:0006351
Lal1g0351 1400 Pfam RNA polymerase Rpb1, domain 4 731 837 IPR007083 GO:0003677|GO:0003899|GO:0006351
Lal1g0351 1400 Pfam RNA polymerase Rpb1, domain 5 844 1334 IPR007081 GO:0003677|GO:0003899|GO:0006351
Lal1g0351 1400 Gene3D RNA polymerase ii 390 451 - -
Lal1g0351 1400 Gene3D - 883 934 - -
Lal1g0351 1400 PANTHER DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1 12 1386 - -
Lal1g0351 1400 Pfam RNA polymerase Rpb1, domain 3 527 706 IPR007066 GO:0003677|GO:0003899|GO:0006351
Lal1g0351 1400 CDD RNAP_III_RPC1_N 33 894 IPR035697 -
Lal1g0351 1400 Gene3D - 824 882 - -
Lal1g0351 1400 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 19 1385 - -
Lal1g0351 1400 Gene3D RNA polymerase Rpb1, domain 3 532 705 IPR042102 -
Lal1g0351 1400 Gene3D - 706 823 IPR038120 -
Lal1g0351 1400 Pfam RNA polymerase Rpb1, domain 1 23 355 IPR007080 GO:0003677|GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0351 Lal-Chr1 2088026 2108204 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0351 K03018 - gmx:100811292 2171.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0351 1 2088026 2108204 Lal1g0351 1 2088026 2108204 ECH