Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lal1g0347 | ATGAACTTCCGAAGAGCTAAAACGATTAATCGAAATCCAGCACGAGCAATTCCATCCCTTCATCATGGTAATAATAAACCTCCACCCCATGAACAATCTCAAACTCAACACCATAAAACTTCAAAGCTTCGCATTCATATTCCTTTCATCACCGAAATCAAAGAGACCCAAAACCCAGAACAAGCCTTATCACTCTTTCACCATTACAAACAACAAGGTTTTACACACTGTTACCCTTCCTATGCCGCTTTAATCTACAAGCTCGCTCGTTCTAGAAACTTCCAAGCTGTTGAAACCGTTCTCAATCATATTCAAGACACGGGCATGCATTGCGGAGAGACCATTTTCATTGCTCTGTTTCAACATTATGGTAAATCGTTACTTCATGATAATGCCATCCAACTCTTTCACAGAATGCCTCACTTCAATTGCGTCCGTACACTGCAGTCTTTAAATACGCTTCTTAATGTTCTGGTTGATAATGATCGGTTTGATGAAGCCAATGATGCTTTTAAACGTTGTTATGAGATGGGTTTTCGTCCAAATACGGTTACTTTCAATATAATGATCAAGGGGTGGTTGGGGGAAGATCAGTGGGAAAAAGCATGTGAGGTGTTTGATGAAATGCTTCAGAAGAGTGTGCAGCCGAGTGTTGTGACTTATAATAGTCTTATTGGTTTTTTATGTAGAAAGGGTGATTTGGACAAAGCAATGTCATTGCTTGAGGACATGAACCGGAAAAGGAAATTTGCGAATGAAGTAACTTATACGTTGTTGATGGAAGGCTTGTGTTCTTTGGAGAAGTATGAGGAGGCTAAGAAGCTATTGTTTGATATGGCATATCGAGGGTGTAAACCTAAGCTGATCAATTTTTCTGTTTTGATGAATGATTTGGGAAAGAGAGGAAAGATTGAGGAGGCAAATTCTTTACTCCATGAGATGAAGAAAAGGCGGCTTAAGCCGGATGTTGTGACATATAATATATTGGTCAATTATCTTTGCAAGGAAGGTAAGACAGAGGAGGCTTATAAAGTATTGCTTGAAATGCAGATCAGTGGCTGTGAGCCAAATGCTGCAACATACAGGATGATGGTTGATGGTTTATGCCGGATTGGGGATTTTGAGGTCAGTCTGAATATTCTGAATGCAATGCTAGCCAGTGGACATTGTCCACGCTCTAAAACCTTTAATTGTTTGGTTGTGGGCCTTCTGAACTCCGGGAATATTAGTGGTGCTTGCTTTGTTTTAGAAGAGATGGAGAAGAGGAAGGTGGCATTTGATTTGGAGAGCTGGGGGTCTATTGTAAAGTATGCTTGTAGTGAGGAGAAGGATGCAAGTGGGCTTATAGACAAACTTACATCCATTCATCAAATAAAATGGAAGGAGATAATGAGAACTGAGAAGGAAGATGAAATGCTGACTAGAATTGATACAAACAAATAA | 1443 | 0.3985 | MNFRRAKTINRNPARAIPSLHHGNNKPPPHEQSQTQHHKTSKLRIHIPFITEIKETQNPEQALSLFHHYKQQGFTHCYPSYAALIYKLARSRNFQAVETVLNHIQDTGMHCGETIFIALFQHYGKSLLHDNAIQLFHRMPHFNCVRTLQSLNTLLNVLVDNDRFDEANDAFKRCYEMGFRPNTVTFNIMIKGWLGEDQWEKACEVFDEMLQKSVQPSVVTYNSLIGFLCRKGDLDKAMSLLEDMNRKRKFANEVTYTLLMEGLCSLEKYEEAKKLLFDMAYRGCKPKLINFSVLMNDLGKRGKIEEANSLLHEMKKRRLKPDVVTYNILVNYLCKEGKTEEAYKVLLEMQISGCEPNAATYRMMVDGLCRIGDFEVSLNILNAMLASGHCPRSKTFNCLVVGLLNSGNISGACFVLEEMEKRKVAFDLESWGSIVKYACSEEKDASGLIDKLTSIHQIKWKEIMRTEKEDEMLTRIDTNK | 480 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lal1g0347 | 480 | TIGRFAM | PPR: pentatricopeptide repeat domain | 360 | 391 | IPR002885 | - | |
| Lal1g0347 | 480 | TIGRFAM | PPR: pentatricopeptide repeat domain | 324 | 358 | IPR002885 | - | |
| Lal1g0347 | 480 | TIGRFAM | PPR: pentatricopeptide repeat domain | 291 | 323 | IPR002885 | - | |
| Lal1g0347 | 480 | TIGRFAM | PPR: pentatricopeptide repeat domain | 219 | 250 | IPR002885 | - | |
| Lal1g0347 | 480 | TIGRFAM | PPR: pentatricopeptide repeat domain | 254 | 286 | IPR002885 | - | |
| Lal1g0347 | 480 | TIGRFAM | PPR: pentatricopeptide repeat domain | 395 | 426 | IPR002885 | - | |
| Lal1g0347 | 480 | TIGRFAM | PPR: pentatricopeptide repeat domain | 151 | 183 | IPR002885 | - | |
| Lal1g0347 | 480 | TIGRFAM | PPR: pentatricopeptide repeat domain | 184 | 217 | IPR002885 | - | |
| Lal1g0347 | 480 | Coils | Coil | 234 | 254 | - | - | |
| Lal1g0347 | 480 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 252 | 286 | IPR002885 | - | |
| Lal1g0347 | 480 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 287 | 321 | IPR002885 | - | |
| Lal1g0347 | 480 | Pfam | PPR repeat | 118 | 144 | IPR002885 | - | |
| Lal1g0347 | 480 | Pfam | PPR repeat | 150 | 178 | IPR002885 | - | |
| Lal1g0347 | 480 | Pfam | PPR repeat | 395 | 423 | IPR002885 | - | |
| Lal1g0347 | 480 | PANTHER | OS05G0548600 PROTEIN | 25 | 454 | - | - | |
| Lal1g0347 | 480 | Gene3D | Tetratricopeptide repeat domain | 12 | 173 | IPR011990 | GO:0005515 | |
| Lal1g0347 | 480 | Gene3D | Tetratricopeptide repeat domain | 174 | 248 | IPR011990 | GO:0005515 | |
| Lal1g0347 | 480 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
| Lal1g0347 | 480 | Gene3D | Tetratricopeptide repeat domain | 249 | 348 | IPR011990 | GO:0005515 | |
| Lal1g0347 | 480 | Gene3D | Tetratricopeptide repeat domain | 349 | 478 | IPR011990 | GO:0005515 | |
| Lal1g0347 | 480 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 182 | 216 | IPR002885 | - | |
| Lal1g0347 | 480 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 322 | 356 | IPR002885 | - | |
| Lal1g0347 | 480 | SUPERFAMILY | TPR-like | 149 | 387 | IPR011990 | GO:0005515 | |
| Lal1g0347 | 480 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 217 | 247 | IPR002885 | - | |
| Lal1g0347 | 480 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 357 | 391 | IPR002885 | - | |
| Lal1g0347 | 480 | Pfam | PPR repeat family | 321 | 370 | IPR002885 | - | |
| Lal1g0347 | 480 | Pfam | PPR repeat family | 181 | 225 | IPR002885 | - | |
| Lal1g0347 | 480 | Pfam | PPR repeat family | 252 | 298 | IPR002885 | - | |
| Lal1g0347 | 480 | PANTHER | TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED | 25 | 454 | - | - | |
| Lal1g0347 | 480 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 147 | 181 | IPR002885 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lal1g0347 | 30 | 452 | Miscellaneous Gene Families | AT4G11690 | 25.404 | 9.04e-46 | 165 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lal1g0347 | - | - | lang:109363290 | 853.588 |