Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0338 ATGGCACCAAAGGCAGAAAAGAAGCTAGCAGAGAAGAAACCCGCAGAGGAGAAGAAATCCACCGTTGCTGAGAAGTCACCACTGGCAGAGAAGAAGCCAAAGGCTGGCAAGAAACTTCCGAAGGAAGGTGGCGCCGCCGGCGACAAAAAGAAGAAGAAGAGTAAGAAGAGCGTGGAGACATACAAAATCTACATATTCAAGGTTCTGAAGCAGGTTCACCCTGACATTGGTATAAGTTCTAAGGCCATGGGTATAATGAACAGTTTCATTAACGATATCTTCGAGAAGCTGGCTCAGGAATCTTCTAGACTCGCTCGCTATAACAAGAAGCCAACGATAACTTCAAGGGAAATTCAAACTGCTGTGAGACTCGTGTTGCCTGGTGAATTGGCGAAGCATGCTGTCTCTGAAGGAACTAAGGCTGTTACCAAACGCTACTGGTACTTGTTCTTATGGATGAGGAATAGTACCAAACAGGCAAGGGAAATAAGAATTGTAGTGTTTTGTAAAATAGGGAAATTTGACAAACCATATCATGTAACTGCTTCAGCGATGGATTATTTAGCTTGGTTTGGCACCCATATTATTGACACCTTTATGCGCTTTGTAAGTTCACGATTGCCTTACCCGCTGAATCGCTTTCGAGGACAAATGGAGTGGATGACTCTGATTCTTTCTCTGCTTTTTCAAGATTCCAAGTTCTCCCTCTTCACTTTTCATTGGGCTTTCCACGTTTCTATTCTGGGACCCAAATTTAATCCTATACCAACTTCACATAATGATTAG 786 0.4313 MAPKAEKKLAEKKPAEEKKSTVAEKSPLAEKKPKAGKKLPKEGGAAGDKKKKKSKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKRYWYLFLWMRNSTKQAREIRIVVFCKIGKFDKPYHVTASAMDYLAWFGTHIIDTFMRFVSSRLPYPLNRFRGQMEWMTLILSLLFQDSKFSLFTFHWAFHVSILGPKFNPIPTSHND 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0338 261 SMART h2b3 51 147 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lal1g0338 261 PANTHER HISTONE H2B.1-RELATED 5 144 - -
Lal1g0338 261 ProSitePatterns Histone H2B signature. 116 138 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lal1g0338 261 MobiDBLite consensus disorder prediction 1 53 - -
Lal1g0338 261 Pfam Core histone H2A/H2B/H3/H4 3 124 IPR007125 GO:0003677
Lal1g0338 261 Gene3D Histone, subunit A 23 146 IPR009072 GO:0046982
Lal1g0338 261 PANTHER HISTONE H2B 5 144 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lal1g0338 261 PRINTS Histone H2B signature 61 79 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lal1g0338 261 PRINTS Histone H2B signature 80 100 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lal1g0338 261 PRINTS Histone H2B signature 102 119 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lal1g0338 261 PRINTS Histone H2B signature 119 132 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lal1g0338 261 PRINTS Histone H2B signature 132 145 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lal1g0338 261 SUPERFAMILY Histone-fold 41 144 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0338 Lal-Chr1 2031398 2032306 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0338 K11252 - sspl:121741882 214.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0338 1 2031398 2032306 Lal1g0338 1 2031398 2032306 ECH
Lal1g0338 1 2031398 2032306 Lal2g0241 2 1407572 1411102 LSH
Lal1g0338 1 2031398 2032306 Lal9g0234 9 1455018 1455464 LSH