Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0270 ATGACCATGAGGGTGGGGAATATGTTACTAAGCACTAGTGTTATGATTATAGTTATAGCCTTTGTCTTGATCATAATGATGGTGCCAAAAAATGTAAGTGCCCAAAGTAGTGTAGCAGATATTGTTACAGCAGAGTTTTTCAATAGTATAATTGATCAAGCAGATGATAGTTGTGCTGGGAAGAACTTCTACTCAAGAGATGCTTTCCTAAATGCTCTCAACTCCTACAATCAATTTGGTAGTCTTAGTTCTGTTGATGACTCTAAGCGTGAGATTGCTGCAGCTTTTGCCCATTTCACCCATGAAACTGGACATTTTTGCTACATAGAAGAGATTGATGGTGCAACAAAGGACTATTGTGACGAAAGCAGTACCCAATACCCTTGCAACCCAGAGAAAGGATACTTTGGGCGTGGACCAATCCAACTATCATGGAACTTCAACTATGGACCAGCTGGGCAGAGCAATGGTTTCGATGGATTGAATGCACCAGAGACAGTGGCAAATGACCCTGTTGTTTCATTTCAAACAGCATTATGGTATTGGATGCAAAATGTGCGCCCTGTTATTGACCAAGGATTTGGTGCAACAATTAGAGCTATTAATGGACAACTTGAATGTGATGGGGCAAATCCAAACACTGTTCAAGCTCGTGTTAATTATTACACTCAATATTGTTCACAACTACGTGTTGATACTGGTGATAATCTTACTTGCTAA 720 0.4 MTMRVGNMLLSTSVMIIVIAFVLIIMMVPKNVSAQSSVADIVTAEFFNSIIDQADDSCAGKNFYSRDAFLNALNSYNQFGSLSSVDDSKREIAAAFAHFTHETGHFCYIEEIDGATKDYCDESSTQYPCNPEKGYFGRGPIQLSWNFNYGPAGQSNGFDGLNAPETVANDPVVSFQTALWYWMQNVRPVIDQGFGATIRAINGQLECDGANPNTVQARVNYYTQYCSQLRVDTGDNLTC 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0270 239 CDD chitinase_GH19 42 239 - -
Lal1g0270 239 ProSitePatterns Chitinases family 19 signature 2. 173 183 IPR000726 GO:0004568|GO:0006032|GO:0016998
Lal1g0270 239 ProSitePatterns Chitinases family 19 signature 1. 58 80 IPR000726 GO:0004568|GO:0006032|GO:0016998
Lal1g0270 239 PIRSF Endochitinase 9 239 IPR016283 GO:0004568|GO:0005975
Lal1g0270 239 Gene3D - 36 239 - -
Lal1g0270 239 PANTHER CHITINASE-RELATED 12 239 - -
Lal1g0270 239 PANTHER ENDOCHITINASE EP3-LIKE 12 239 - -
Lal1g0270 239 Gene3D Endochitinase, domain 2 110 167 - -
Lal1g0270 239 SUPERFAMILY Lysozyme-like 37 239 IPR023346 -
Lal1g0270 239 Pfam Chitinase class I 193 239 IPR000726 GO:0004568|GO:0006032|GO:0016998
Lal1g0270 239 Pfam Chitinase class I 41 186 IPR000726 GO:0004568|GO:0006032|GO:0016998
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0270 Lal-Chr1 1584942 1586270 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0270 37 239 Glycoside Hydrolase AT3G54420 77.833 1.42e-119 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0270 K01183 - gmx:100527091 387.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0270 1 1584942 1586270 Lal1g0270 1 1584942 1586270 ECH