Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0251 ATGAGGCCTTTGAGATTGATAGATCCTCTGGTGTACCTTGACCATGCCAAGGCCATAAAATCTGGTTTTGCATCAAGCATTTTCACTTGTAATCAACTCATCCATCTTTATTGTAACCATGGCCTTGTGAAAGATGCCCATAAACTGTTTGATGAAATTCCCCACCCAAACGTGTTCTCTTGGAATGTCATTATTATGGCATACATAAAAGCACGTGACTTGACAAAAGCACGTGCCCTTTTTGACTCTGCCCCTCACAAAGATTTGGTTTCTTATAATTCCATGCTTTCCGCTTATGTTGGTGCTGACGAGTATGAAACTGATGCACTTGATTTGTTTACTACAATGCAATCTGCACGTGACACAATTGGGGTTGATGAGTTCACTCTGACAACCATGCTTAACTTGACTGCCAAGCTTCGTATGGGGTGTTATGGCGAGCAGATACATTCATATATGATGAAAACCGCAAACGATTCATGTAAGTTTGCAGTGAGTTCTCTCATCGACATGTATTCTAAATGTGGTTCATTCCATGAAGCATGCAATGTATTCAGTGGTTGTATTGGGACGGTAGATTTGGTTTCAAAGAATGCAATGGTTGCAGCTTGTTGTAGGGAACGAAAGATGGACATAGCTTTGAGTGTGTTTTGGAAATATCCTGAATTAAATGATATTGTGTCTTGGAATACATTGATTGCAGGATATGCCCAGAATGGATTTATGGAGAAATCACTTGCCTTGTTTTCTGAAATGATAGAAAATGGTATTGGGTGCAATGAACACACTTTAGCAAGTGTTTTGAGTGCTTGCTCTGGTCTAAAGTGGTTGAAACTTGGCAAGTGTGTCCATGCTTGGGTGTTGAAAAATGGCTACAATTCAAATCAATTTATTAACAGTGCCATTGTTGACCTCTACTGTAAGTGTGGGAAGAATCGTTGTGCAGAGTCGGTCTATGAAGGAATTAGGATTAAAAGCCCATTTGCAGCAGCTTCATTGATTTCAGGCTATTCATCTCAAGGCAACATGGCAGAAGCCCAAAGGCTTTTTGATTCTCTAACCGAACGAAACTCTGTTGTCTGGACAGCTCTGTGTTCTGGCTATGTCAAATCACAACAAAGTAAGGCAGTGTTCAAACTTTTTAGAGAGTTTACCACTACAGAAGGACTAGTTCCTGATGCAATGATCATTATCAGTGTGCTTGGTGCCTGTGCAATACAAGCTACCCTTAGACTGGGAAAGCAAATTCATGCTTACATCTTGAGAATGATATTTAATATGGATGAGAAATTGCTGAGTGCTTTGGTCGATATGTACTCAAAATGTGGGCATATAATATATGCTGGGAAAACCTTCCAACTAGTTCCAGACAGTGATAGAGATGCAATCTTATATAATGTTATGATAGCTGGTTATGCTCATCATGGATTTGAAGGTGAAGCGATTCAGCTTTTTCAGGAAATGTTGAAGAAAAGTGTCAAGCCGGATGCAGTCACTTTTGTAGCACTTCTATCAGCTTGTCGGCACCGTGGATTAGTAGAGCTAGGAGAGCAATTTTTCATCTCAATGCAAGAACATTACAATGTAGTGCCCGAGATTTACCACTATGCATGTATGGTTGATATGTATGGAAAGGCTAATAAACTAGAAAAGGCGGTAGAGTTTATGAGGAAGATTCCCATACAAATAGATGCTACAATCTGGGGAGCATTTCTTAATGCTTGTCAGGTAAGCAGCAATACAGAACTTGTCAAACAGGCAGAAGAGGAACTTTTAAAACTTCAGGCAGATAATGGGTCTAGGTATGTGCAATTGGCTAATGCCTATGCCACTGAGGGGAAATGGGATGATATGGTAAGAATACGAAAGAAAATGAGAGGGAAGGAAGCTAAGAAGCTTGCTGGTTGCAGTTGGATATATGTGGACAACGACACTCATGTATTTACTTCTGGTGATGCCTCCCATTCAAAAGTAGATGCAATCTATTCCACTTTGGTGTGCTTGAATGGGAAGCTGTATCTATCATCCACAGAGCTGAAGCAACTTTATGATATTCAGGGTGATGTTGTTGAGGGCATATTTTGA 2085 0.4019 MRPLRLIDPLVYLDHAKAIKSGFASSIFTCNQLIHLYCNHGLVKDAHKLFDEIPHPNVFSWNVIIMAYIKARDLTKARALFDSAPHKDLVSYNSMLSAYVGADEYETDALDLFTTMQSARDTIGVDEFTLTTMLNLTAKLRMGCYGEQIHSYMMKTANDSCKFAVSSLIDMYSKCGSFHEACNVFSGCIGTVDLVSKNAMVAACCRERKMDIALSVFWKYPELNDIVSWNTLIAGYAQNGFMEKSLALFSEMIENGIGCNEHTLASVLSACSGLKWLKLGKCVHAWVLKNGYNSNQFINSAIVDLYCKCGKNRCAESVYEGIRIKSPFAAASLISGYSSQGNMAEAQRLFDSLTERNSVVWTALCSGYVKSQQSKAVFKLFREFTTTEGLVPDAMIIISVLGACAIQATLRLGKQIHAYILRMIFNMDEKLLSALVDMYSKCGHIIYAGKTFQLVPDSDRDAILYNVMIAGYAHHGFEGEAIQLFQEMLKKSVKPDAVTFVALLSACRHRGLVELGEQFFISMQEHYNVVPEIYHYACMVDMYGKANKLEKAVEFMRKIPIQIDATIWGAFLNACQVSSNTELVKQAEEELLKLQADNGSRYVQLANAYATEGKWDDMVRIRKKMRGKEAKKLAGCSWIYVDNDTHVFTSGDASHSKVDAIYSTLVCLNGKLYLSSTELKQLYDIQGDVVEGIF 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0251 694 PANTHER - 188 346 - -
Lal1g0251 694 PANTHER - 330 678 - -
Lal1g0251 694 PANTHER - 15 218 - -
Lal1g0251 694 Pfam PPR repeat family 225 271 IPR002885 -
Lal1g0251 694 Pfam PPR repeat family 461 507 IPR002885 -
Lal1g0251 694 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 26 60 IPR002885 -
Lal1g0251 694 Coils Coil 577 597 - -
Lal1g0251 694 Gene3D Tetratricopeptide repeat domain 414 510 IPR011990 GO:0005515
Lal1g0251 694 Gene3D Tetratricopeptide repeat domain 15 142 IPR011990 GO:0005515
Lal1g0251 694 Gene3D Tetratricopeptide repeat domain 277 413 IPR011990 GO:0005515
Lal1g0251 694 Gene3D Tetratricopeptide repeat domain 511 638 IPR011990 GO:0005515
Lal1g0251 694 Gene3D Tetratricopeptide repeat domain 143 276 IPR011990 GO:0005515
Lal1g0251 694 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 225 259 IPR002885 -
Lal1g0251 694 TIGRFAM PPR: pentatricopeptide repeat domain 464 497 IPR002885 -
Lal1g0251 694 TIGRFAM PPR: pentatricopeptide repeat domain 227 260 IPR002885 -
Lal1g0251 694 TIGRFAM PPR: pentatricopeptide repeat domain 28 53 IPR002885 -
Lal1g0251 694 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 88 119 IPR002885 -
Lal1g0251 694 Pfam E motif 579 639 IPR046848 -
Lal1g0251 694 Pfam PPR repeat 196 218 IPR002885 -
Lal1g0251 694 Pfam PPR repeat 165 185 IPR002885 -
Lal1g0251 694 Pfam PPR repeat 535 558 IPR002885 -
Lal1g0251 694 Pfam PPR repeat 59 82 IPR002885 -
Lal1g0251 694 Pfam PPR repeat 332 357 IPR002885 -
Lal1g0251 694 Pfam PPR repeat 28 53 IPR002885 -
Lal1g0251 694 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 326 360 IPR002885 -
Lal1g0251 694 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 461 495 IPR002885 -
Lal1g0251 694 PANTHER - 330 678 - -
Lal1g0251 694 PANTHER - 188 346 - -
Lal1g0251 694 PANTHER - 15 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0251 Lal-Chr1 1510915 1512999 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0251 64 665 Glycoside Hydrolase AT3G49170 31.414 1.80e-91 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0251 - - gmx:100803987 1109.75