Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0244 ATGGAGATCGATTTCAATGAATACCAATTACGATGTGAACTCCATGGCCACGAAGACGATGTTCGTGGAATATGCATTTGCGGCAACGACGCCATAGCGACGTCGTCCAGGGACCGAACGATTAGGTTTTGGTCTCTTGATTCTTCCGATAAGCGCAAGTTAGCGTGTTCCAAAATTCTGTTAGGGCACTCTAGTTTTGTGGGACCCTTGGTATGGATTTCACCTAACCAAGAGTTCCCACAAGGTGGGATTGTATCTGGTGGAATGGATACACTTGTGTTGGTATGGGATTTGAAAACTGGAGAAAAGGTTCACACACTCAAGGGACATCAATTGCAGGTTACTGCCATTGCATTGGATGATAATGGAGATATCATATCTTCTTCTGTTGATTGCACCTTGAGACGGTGGAGGAATGGGCAATCTGTAGAGACGTGGGAGGCTCATAAGGCACCTGTCCAGGCAGTTATAAAGCTACCCTCTGGCGAGATTGTTACAGGTTCAAGTGACACTACTTTAAAGCTTTGGAAAGGGAAAACTTGTTTACACACTTTTGATGGACATGCAGATACAGTTCGAGGCTTGGCTGCGATGTCTGGTCTTGGAATCTTATCTGCATCACATGATGGCTCTCTCAGATTATGGGCAGTAAGTGGTGAAGTATTAATGGAGATGGTTGGTCATACTGCAATTGTTTATTCAGTTGATTCACATGCATCAGGACTTATTGTCAGTGGCAGCGAAGATCGTTTCGCAAAAATATGGAAAGATGGAGTTTGTGTTCAGAGCATAGAACATCCTGGTTGTGTATGGGATGCAAAATTCCTGGAAAATGGGGATATCGTGACAGCATGTTCAGATGGTACTGTACGCATTTGGACTGTACATCAGGATACTGTTGCTGACCAGCTAGAGCTTGATTTATATACTTCAGAACTCTCTCAATACAAAGCTAGCAGAAAGAGGGTTGGAGGATTGAAATTGGAAGAGTTACCTGGCTTGGATTCACTGAAGATCCCAGGAACTAGTGATGGCCAAACAAAAATAGTTCGGGAGGGGGATAATGGGGTGGCATATGCATGGAACATGCCAGAGCAGAAGTGGGATAAAATTGGTGAAGTTGTTGATGGACCGGAGGAATCAAGTCGTCCTTTCCATGATGGTGCTCAGTATGACTATGGTCAGTTTCCTATGTTCCCCCCGGCAGAGTTGATTAGGGTTGACTTTCATCACACATTTCTTATAAAATTTACCTCTGTCTGTTCAGTGTTTGATGTGGATATTGGAGATGGTATGCCTACCCGTAAGTTGCCGTACAACCGATCAGCAAATTGCAAGATGTCTCCAGATAACCCATATGACGTCGCTGACAAATGGCTCCTCAAGGAGAGTCTCCCTCTTTCCTTCCGTGAGCAAATCGTACAGTTCATACTTCAAAATACTGGACAAAAGGATATTACTTTTGATTCTTCATTTCGTGATCCCTATACTGGCTCCAACGCTTACATACCAGGACAATCTTCAAAAGTGTCTGATGTTTCTGCAAAACCTACTTTCAAGCATATTCCTAAGAAAGGGATGCTTGTTTTTGATGCAGCTCAGTTTGATGGGATCCTTAAAAAGATTACTGAGTTCAATAATGCTCTACTATCTGACCAGGAAACACAGAACTTGTCTTTGACTGAGCCTGATGTTTCCAGACTGGGTTCCATTGTTAAAACTCTGAAAGATACTTCATATTACCATTCTAGTAAATTTGCAGACTCTGATATCGCCTTGTTACTGAATTTACTTCAGTCGTGGCCACTCAAAATGATATTTCCCGTCATCGATATTTTAAGGATGATAGTTCTTCATCCTGATGGGGCTACTAACCTTCACAAGTATTTTGAAGCTAAAAATGATATACTAATGGAAGTGATTAAGAAAGTGACAGTAAATCCGACAATTCCTGCAAATTTGTTGACCAGCATTCGTACTATAACTAATCTCTTCAAGAATTCATGCTACTTCAGCTGGTTGCAAAAACACTGCAGTGAGATTCTTGATGCTTTCTCAAGCTGTAATTCATCATCAAACAAAAATTTGCAGTTGTCCTATTCTACCTTGATACTCAATTATACTGTGCTATTGATTGAATCAAAGGATCAAGAAGGTCAATCTCAAGTTTTATCAGCAGCACTTGAGATTGTCGAAAATGAAAACGTAGAAGGTGATTCCAAATTCCGCGCATTAGTTGCTATTGGATCACTGATGCTTGAGGGTCTTGTTAAAAAAATAGCACTGGACTTTGATGTTCTGAACATTGCAAAAGCTGCCAAGGGTTCTACGGAAGCCAAGATAGCTGAAGTTGGATCTGACATTGAGCTGTTAGCAAAGCAGAGCTGA 2388 0.4167 MEIDFNEYQLRCELHGHEDDVRGICICGNDAIATSSRDRTIRFWSLDSSDKRKLACSKILLGHSSFVGPLVWISPNQEFPQGGIVSGGMDTLVLVWDLKTGEKVHTLKGHQLQVTAIALDDNGDIISSSVDCTLRRWRNGQSVETWEAHKAPVQAVIKLPSGEIVTGSSDTTLKLWKGKTCLHTFDGHADTVRGLAAMSGLGILSASHDGSLRLWAVSGEVLMEMVGHTAIVYSVDSHASGLIVSGSEDRFAKIWKDGVCVQSIEHPGCVWDAKFLENGDIVTACSDGTVRIWTVHQDTVADQLELDLYTSELSQYKASRKRVGGLKLEELPGLDSLKIPGTSDGQTKIVREGDNGVAYAWNMPEQKWDKIGEVVDGPEESSRPFHDGAQYDYGQFPMFPPAELIRVDFHHTFLIKFTSVCSVFDVDIGDGMPTRKLPYNRSANCKMSPDNPYDVADKWLLKESLPLSFREQIVQFILQNTGQKDITFDSSFRDPYTGSNAYIPGQSSKVSDVSAKPTFKHIPKKGMLVFDAAQFDGILKKITEFNNALLSDQETQNLSLTEPDVSRLGSIVKTLKDTSYYHSSKFADSDIALLLNLLQSWPLKMIFPVIDILRMIVLHPDGATNLHKYFEAKNDILMEVIKKVTVNPTIPANLLTSIRTITNLFKNSCYFSWLQKHCSEILDAFSSCNSSSNKNLQLSYSTLILNYTVLLIESKDQEGQSQVLSAALEIVENENVEGDSKFRALVAIGSLMLEGLVKKIALDFDVLNIAKAAKGSTEAKIAEVGSDIELLAKQS 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0244 795 ProSiteProfiles PFU domain profile. 360 491 IPR015155 -
Lal1g0244 795 Pfam PUL domain 522 787 IPR013535 -
Lal1g0244 795 Gene3D - 520 791 IPR011989 -
Lal1g0244 795 ProSiteProfiles Trp-Asp (WD) repeats profile. 146 177 IPR001680 GO:0005515
Lal1g0244 795 Gene3D - 421 489 IPR038122 -
Lal1g0244 795 Gene3D - 4 311 IPR015943 GO:0005515
Lal1g0244 795 PANTHER PHOSPHOLIPASE A-2-ACTIVATING PROTEIN 422 791 - -
Lal1g0244 795 PANTHER PHOSPHOLIPASE A-2-ACTIVATING PROTEIN 4 393 - -
Lal1g0244 795 CDD WD40 10 293 - -
Lal1g0244 795 SUPERFAMILY WD40 repeat-like 5 305 IPR036322 GO:0005515
Lal1g0244 795 ProSiteProfiles Trp-Asp (WD) repeats profile. 225 256 IPR001680 GO:0005515
Lal1g0244 795 Pfam WD domain, G-beta repeat 12 45 IPR001680 GO:0005515
Lal1g0244 795 Pfam WD domain, G-beta repeat 101 137 IPR001680 GO:0005515
Lal1g0244 795 Pfam WD domain, G-beta repeat 141 177 IPR001680 GO:0005515
Lal1g0244 795 Pfam WD domain, G-beta repeat 180 215 IPR001680 GO:0005515
Lal1g0244 795 Pfam WD domain, G-beta repeat 221 256 IPR001680 GO:0005515
Lal1g0244 795 Pfam WD domain, G-beta repeat 259 293 IPR001680 GO:0005515
Lal1g0244 795 ProSitePatterns Trp-Asp (WD) repeats signature. 84 98 IPR019775 -
Lal1g0244 795 ProSiteProfiles PUL domain profile. 520 791 IPR013535 -
Lal1g0244 795 Pfam PFU (PLAA family ubiquitin binding) 340 393 IPR015155 -
Lal1g0244 795 Pfam PFU (PLAA family ubiquitin binding) 423 484 IPR015155 -
Lal1g0244 795 PRINTS G protein beta WD-40 repeat signature 32 46 IPR020472 -
Lal1g0244 795 PRINTS G protein beta WD-40 repeat signature 164 178 IPR020472 -
Lal1g0244 795 PRINTS G protein beta WD-40 repeat signature 203 217 IPR020472 -
Lal1g0244 795 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 14 48 - -
Lal1g0244 795 ProSiteProfiles Trp-Asp (WD) repeats profile. 185 215 IPR001680 GO:0005515
Lal1g0244 795 PANTHER PHOSPHOLIPASE A2-ACTIVATING PROTEIN 422 791 - -
Lal1g0244 795 PANTHER PHOSPHOLIPASE A2-ACTIVATING PROTEIN 4 393 - -
Lal1g0244 795 ProSiteProfiles Trp-Asp (WD) repeats profile. 84 106 IPR001680 GO:0005515
Lal1g0244 795 ProSiteProfiles Trp-Asp (WD) repeats profile. 14 54 IPR001680 GO:0005515
Lal1g0244 795 SMART WD40_4 139 177 IPR001680 GO:0005515
Lal1g0244 795 SMART WD40_4 218 256 IPR001680 GO:0005515
Lal1g0244 795 SMART WD40_4 178 216 IPR001680 GO:0005515
Lal1g0244 795 SMART WD40_4 257 294 IPR001680 GO:0005515
Lal1g0244 795 SMART WD40_4 7 45 IPR001680 GO:0005515
Lal1g0244 795 SMART WD40_4 100 138 IPR001680 GO:0005515
Lal1g0244 795 SMART WD40_4 53 97 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0244 Lal-Chr1 1470055 1480514 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0244 1 794 Acyl Lipid Metabolism Gene Families AT3G18860 67.925 0.0 1137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0244 K14018 - gmx:100816481 1312.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0244 1 1470055 1480514 Lal1g0244 1 1470055 1480514 ECH