Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0197 ATGGCGAGTTTAGGTGCGATTCTGAGACATCCAGATGATTTTTACCCGTTGCTTAAGCTGAAAATGGCGGCCAGGAACATCGAGAAGCAGATCCCTTCGGAACCGCACTGGGGATTCTGCTATACCATGCTCCACAAGGTTTCTAGAAGCTTCGCACTCGTTATCCGCCAACTCGGTCCAGATCTTCGTAATGCTGTTTGCATATTTTATTTGGTTCTTCGAGCACTTGATACCGTTGAGGACGATACCAGCATAGCTACAGATGTCAAGGTACCGATACTGATAGACTTTTATCGCCACATATATGATCGTGATTGGCACTTTCCATGTGGCACAAAGGACTACAAAGTTCTAATGGACCAGTTTCATCATGTTTCAACTGCCTTTCTGGAGCTTGAAAAGACCTACCAGGAAGCAATTGAGGATATTACCAAAAGGATGGGTGCTGGAATGGCCAAATTTATTTGCAAGGAGGTAGAAACAATTGACGACTATGATGAATATTGTCACTATGTGGCTGGACTTGTAGGGCTAGGTTTATCAAAACTTTTCCACTCCTCTGGTTTAGAAGATCTGGCTCCAGATTCTCTTTCCAATTCAATGGGCTTGTTTCTTCAGAAAACAAATATTATTCGAGATTATCTAGAAGATATCAACGAGATACCCAAGTCACGCATGTTTTGGCCTCGACAGATCTGGAGTAAATATGTTAATAAACTTGAGGATATGAAATATGAAGAGAACTCTATCACGGCAGTGCAATGCTTAAATGACATGGTCACTAATGCCCTGATCCATGCTGAAGACTGCTTAAAATACATGTCTGCTTTACGAGACTCGGCTATATTTCGCTTTTGTGCCATTCCCCAGATAATGGCAATTGGAACACTTGCATTATGCTACAACAACATTGAAGTCTTCAGAGGAGTGGTTAAAATGAGGCGTGGTCTAACTGCCAAAGTGATTGACCGAACAAAGACTATGGCTGATGTCTACGGTGCTTTCTTTGATTTTGCTTGTATGTTAGAGTCCAAGGTTGGCAAAAATGATCCTAATGCAACAAAAACATTGACTAGGCTGGAAGCTATACAGAAAACCTGCAGAAAATCTGGTCTCCTTAGTAAAAGGAAATCTTACATACTAAATAATGAAAATGGCTCAACCATGATTATCATACTGGTCATCATAGTCTCCGTCATCTTTGCTTATTTCTCTGCCAACCGCCAAAAATAA 1233 0.412 MASLGAILRHPDDFYPLLKLKMAARNIEKQIPSEPHWGFCYTMLHKVSRSFALVIRQLGPDLRNAVCIFYLVLRALDTVEDDTSIATDVKVPILIDFYRHIYDRDWHFPCGTKDYKVLMDQFHHVSTAFLELEKTYQEAIEDITKRMGAGMAKFICKEVETIDDYDEYCHYVAGLVGLGLSKLFHSSGLEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPRQIWSKYVNKLEDMKYEENSITAVQCLNDMVTNALIHAEDCLKYMSALRDSAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVIDRTKTMADVYGAFFDFACMLESKVGKNDPNATKTLTRLEAIQKTCRKSGLLSKRKSYILNNENGSTMIIILVIIVSVIFAYFSANRQK 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0197 410 Gene3D Farnesyl Diphosphate Synthase 34 370 IPR008949 -
Lal1g0197 410 SFLD Squalene/Phytoene Synthase Like 37 325 IPR002060 GO:0009058
Lal1g0197 410 PANTHER SQUALENE SYNTHASE-LIKE ISOFORM X1 1 408 - -
Lal1g0197 410 ProSitePatterns Squalene and phytoene synthases signature 2. 201 229 IPR019845 GO:0016765
Lal1g0197 410 Pfam Squalene/phytoene synthase 45 315 IPR002060 GO:0009058
Lal1g0197 410 Coils Coil 409 410 - -
Lal1g0197 410 CDD Trans_IPPS_HH 38 320 IPR033904 GO:0004311
Lal1g0197 410 SUPERFAMILY Terpenoid synthases 37 367 IPR008949 -
Lal1g0197 410 PANTHER FARNESYL-DIPHOSPHATE FARNESYLTRANSFERASE 1 408 IPR044844 GO:0004311
Lal1g0197 410 SFLD Isoprenoid Synthase Type I 37 325 - -
Lal1g0197 410 ProSitePatterns Squalene and phytoene synthases signature 1. 168 183 IPR019845 GO:0016765
Lal1g0197 410 TIGRFAM squal_synth: farnesyl-diphosphate farnesyltransferase 36 367 IPR006449 GO:0004310|GO:0008610
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0197 Lal-Chr1 1172255 1178406 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0197 K00801 - gmx:547940 745.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0197 1 1172255 1178406 Lal1g0197 1 1172255 1178406 ECH