LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal1g0191	ATGCCTGCCTTGGCTTGTTGCGTTGATCCTGCTGCACTTTTTCCTCCCGGTTACGCTCTTGCCGCCGGTGGCATCTCTATTCCGCCGCCGGTTACATTTTCCGACGACTGGTCACCTTCTCTCTCAGCCTCACTTTACAAGGTTGATGGTTGGGGCGCTCCTTACTTCGCTGTCAACTCCTCCTCCGGTAACATCACCGTCCGGCCACATGGTTCCGATACCATGCCACACCAGGAGATTGATTTGATCAAAATCGTGAAGAAAGCTTCGGATCCGAAATCTTTAGGCGGACTCGGGTTACCGCTTCCTCTCATTGTTCGGTTCCCTGATGTACTCAAAAACCGAGTCGAGTGTCTTCAATCTGCATTTAACTATGCAATTGAATCACGAGGTTATGAATCTCATTACCAAGGTGTTTACCCTGTGAAGTGCAACCAGGACCGGTTCGTTGTTGAGGATATAGTTTCATTCGGGTCATCTTTCCGGTTCGGGTTAGAAGCCGGATCCAAACCGGAACTCCTCCTCGCTATGAATTCCTTGTGCAAGGGAAGCGCAGAAGCGTTTCTGGTTTGCAATGGTTTCAAAGACAGTGAGTATATTACTCTTGCTCTTCTTGCGAGAAAGCTAGCCTTGAATACTGTTATTGTTCTTGAACAAGAGGAAGAGCTTGATTTGGTGATTGAGATAAGTAATAAGCTTTGCATTCGTCCTGTGATTGGTCTTCGTGCCAAGCTCAGAACAAAGCATGGTGGCCATTTTGGGTCCACTTCTGGTGAGAAAGGGAAATTTGGTTTAACGACTACTCAGATTTTGAAGGTTGTGAAAAAGCTTGAACAAGTTGGCATGCTTGATTGTCTCCAATTGCTGCATTTCCACATTGGTTCTCAGATTCCTTCCACAACATTGCTCGCTGATGGTGTAGGCGAGGCTGCCCAGATTTACTGTGAATTGGTTCGTCTTGGTGCACAAATGGGAGTTATTGATATTGGTGGTGGTTTGGGCATTGACTATGATGGTTCTAAATCAGTTGAGTCTGATATTTCAGTTGGTTATACTCTTGAAGAGTATGCTGCTGCTGTTGTTGATGCTGTGCTGCGTGTTTGCGATAGCAAATTGATTAAGCACCCTGTGATATGTAGCGAGAGTGGCAGGGCTATTGTTTCTCACCATTCGGTGTTGATTTTTGAGGCCATGGCTGCAAGTGTGTGTGCAGCTCCTGCTTTATCAACCCTCGGGTTGCAGTATTTGGTTGATGGGTTATCAGAGGAAGCACGCGCTGATTATCACAACTTATTTGCTGCAACAATGAGGGCAGATTATGAAACATGTTTGCTATCCATTGATCAATTCAAGCAAAGATGTGTTGAACAGTTCAAGCAAGGAACTTTAGGAATGAAACAGCTTGCTGCGGTTGATGGTTTGTGTGATCTTATTGGTAACGCAATCGGGGAAAATGACCCAGTTAGAACATACCATGTGAATCTTTCGGTTTTCACATCAATTCCTGATTTCTGGGGGATTGAGCAGATGTTTCCAATTGTCCCTATTCATCGTCTGGATGAGAAGCCAACAGTGAGGGGAATTTTGTCTGATTTGACTTGTGACAGTGACGGGAAGGTAGACAAGTTCATAGGTGGCGAATCAAGCTTGCCGCTGCATGAATTGGAAGGAGGCCATTGTAGTGGCCGGTATTATTTGGGAATGTTCTTGGGTGGGGCATATCAGGAGGCGCTTGGTGGTGTCCACAACCTGTTTGGTGGTCCAAGTGTTGTTCGGGTGTTACAGAGCGATGGCCCTCATGGTATTGCTGTGTCACATGCAGCACCTGGACCTTCCTGTGGAGATGTCCTCCGAGTGGTGCAGTACGAGCCAGAGCTCATGTTTGAGACTCTCAAGCACCGGGCCGAAAAGTTTGGCAACGATGATGGCAACAGTGTAGCGGCATTGGCGACTTACCTCGCCAGCTCATTCAACAACATGCCTTATCTGGCTGCATCATCATGTGACATGAATGCGTTGAATAATCGTAGTAGTAATAATAATAATAATGGCTTTTACTACTGTTCCAGTGATGATGATTACAATGCTGCTATAGCTGATTCTGCTTGTGGTGTTGGAGAAGAGGAGCGGTGGTCTTTTTGCAGTGCTTGA	2151	0.463	MPALACCVDPAALFPPGYALAAGGISIPPPVTFSDDWSPSLSASLYKVDGWGAPYFAVNSSSGNITVRPHGSDTMPHQEIDLIKIVKKASDPKSLGGLGLPLPLIVRFPDVLKNRVECLQSAFNYAIESRGYESHYQGVYPVKCNQDRFVVEDIVSFGSSFRFGLEAGSKPELLLAMNSLCKGSAEAFLVCNGFKDSEYITLALLARKLALNTVIVLEQEEELDLVIEISNKLCIRPVIGLRAKLRTKHGGHFGSTSGEKGKFGLTTTQILKVVKKLEQVGMLDCLQLLHFHIGSQIPSTTLLADGVGEAAQIYCELVRLGAQMGVIDIGGGLGIDYDGSKSVESDISVGYTLEEYAAAVVDAVLRVCDSKLIKHPVICSESGRAIVSHHSVLIFEAMAASVCAAPALSTLGLQYLVDGLSEEARADYHNLFAATMRADYETCLLSIDQFKQRCVEQFKQGTLGMKQLAAVDGLCDLIGNAIGENDPVRTYHVNLSVFTSIPDFWGIEQMFPIVPIHRLDEKPTVRGILSDLTCDSDGKVDKFIGGESSLPLHELEGGHCSGRYYLGMFLGGAYQEALGGVHNLFGGPSVVRVLQSDGPHGIAVSHAAPGPSCGDVLRVVQYEPELMFETLKHRAEKFGNDDGNSVAALATYLASSFNNMPYLAASSCDMNALNNRSSNNNNNGFYYCSSDDDYNAAIADSACGVGEEERWSFCSA	716

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lal1g0191	716	CDD	PLPDE_III_ADC	105	593	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Lal1g0191	716	PRINTS	Arginine decarboxylase signature	108	123	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Lal1g0191	716	PRINTS	Arginine decarboxylase signature	132	146	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Lal1g0191	716	PRINTS	Arginine decarboxylase signature	190	205	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Lal1g0191	716	PRINTS	Arginine decarboxylase signature	216	237	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Lal1g0191	716	PRINTS	Arginine decarboxylase signature	240	262	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Lal1g0191	716	PRINTS	Arginine decarboxylase signature	368	385	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Lal1g0191	716	PRINTS	Arginine decarboxylase signature	494	515	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Lal1g0191	716	PRINTS	Arginine decarboxylase signature	519	544	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Lal1g0191	716	PRINTS	Arginine decarboxylase signature	572	593	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Lal1g0191	716	Gene3D	Lyase, Ornithine Decarboxylase; Chain A, domain 1	46	594	IPR009006	GO:0003824
Lal1g0191	716	Gene3D	Alanine racemase	109	390	IPR029066	-
Lal1g0191	716	ProSitePatterns	Orn/DAP/Arg decarboxylases family 2 signature 2.	321	334	IPR022657	-
Lal1g0191	716	ProSitePatterns	Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site.	140	158	IPR022653	-
Lal1g0191	716	PANTHER	ARGININE DECARBOXYLASE	1	716	-	-
Lal1g0191	716	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	140	158	IPR000183	GO:0003824
Lal1g0191	716	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	164	176	IPR000183	GO:0003824
Lal1g0191	716	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	283	296	IPR000183	GO:0003824
Lal1g0191	716	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	378	397	IPR000183	GO:0003824
Lal1g0191	716	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	572	585	IPR000183	GO:0003824
Lal1g0191	716	PANTHER	ARGININE DECARBOXYLASE	1	716	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Lal1g0191	716	SUPERFAMILY	PLP-binding barrel	108	390	IPR029066	-
Lal1g0191	716	Gene3D	-	407	487	-	-
Lal1g0191	716	SUPERFAMILY	Alanine racemase C-terminal domain-like	484	597	IPR009006	GO:0003824
Lal1g0191	716	PIRSF	ARGDC	26	665	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Lal1g0191	716	Pfam	Pyridoxal-dependent decarboxylase, pyridoxal binding domain	135	388	IPR022644	GO:0003824
Lal1g0191	716	TIGRFAM	speA: arginine decarboxylase	37	663	IPR002985	GO:0006527\|GO:0008295\|GO:0008792

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal1g0191	Lal-Chr1	1148455	1150605	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal1g0191	K01583		-	qsu:111996615	1071.23

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal1g0191	1	1148455	1150605	Lal1g0191	1	1148455	1150605	ECH