Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0172 ATGGAAGTTATTCTCTGTACCAACCATCTCAGACACACCTCTTCCTTCTCTTTCTCCTTCTCCACTTCTTTCCCTCCCACCCAGTTCCTTGGTTCTTCTACCCACACTCTCAGGCCCAAGCCCAAGCCCAAGCCCAAGCCCCTTCGTTCTCCTAACAGCAGCAACAACAACTTCCACCACCTCTTCCGTTTCCATTCCCCGCGCTTTCTCTTCAAGCCCTCCTCCTTCCATTCTCACCCAACCATTATTCTCTTCATCGTTGTTACTATATCTGCAGTTTCATTCATTCACTACACTCTCACCAACAAAAACAAAAACAATAACAATTCAACTCAGCTACGTCCACACCCTCATTTTGCGTTATCACCACAATTTCAAACGGATAATTCACTCACTGAACAACAAGATGAGATAAAGGACCTTCCTTTTTTGAATTCATCATCATCATCATCATCTTCTTCTGCTGCTGTTTCTGTTGCATCTGTTAATGATGATGATTCCAATGTATTCACAGTTACTGATACTTTTTTGCCACTGCCTTTCAAATCCACTTCACTCTCTGACCCGGACTTGCCTTTCACTCTTATTCAATTTGAGGAGAATGCTGCTGCTGCTGCTGCTGCTTCTTCTGTTACCCAAAACGATGCGCTCGATGAAGAACACAGTGAAGAGAAAATTGAACTTGGTTCCATCAGCAATGGTTTTCTTTTTGGCGAATCGGTTAGGGAAGATCTGTACATGTTTTATGAGGCTAATAAGAAGCCTGCAAATGGAACCATCTCATCACCTGGTAGTTGGAAACCGTTATCTCCTAATGCTTCTTTTGTCAATGGAAATGGGTTTCCCTCAGAAATTGGAAATGTCACTCTAAAAGAGCATGTTGAAGGAGTGGTTCCGAATTCCAATTATATAGGAGGCTACCCTGCACAAGGTGGAAGTAATAACTCGAGGAATGGCAGCAGATATCTGAGAAACAGGGAAAGAAACTATCTGGATCATAACACTAACAATGTTTTGCCTCAGAATGGCCATTCAATCAGGGTGCAAGCTCATCAGAAAAATGATCGAACCAAGGTGTATGATGATCAGAAAAATGACATTTCAGAGTATCTAAGCAAATATAATAATTTGCTAAAAGTTGGGAGGTTACGTGAATGCGTAGAATTGCTTAAAGATACAGAGAAAAAGGGTTTATTAGATATGACTAAGGTTTATCATGCAAAGTTTTTCAACACTTGCAAGAGACAAAAGGCAGTTAAAGAAGCTTTTGATTACATTAGGCTTATCCCAAATCCAACATTGAGTACATTTAATATGCTCATGTCAGTGTGTACAAGCTCCCAAGACTCAGAGCGGGCTTTCCAAGTTTTGCAGCTTCTTAAAGAGGCCCGACTAGAACCTGATTGCCAACTTTATACCACTTTGATATCAACTTGTGCTAAGAGTGGAAAAGTTGATCAAATGTTTGAAGTGTTTCACAAGATGGTTAATTCTGGAGTGGAACCTAACATTCTTACCTATGGGGCTCTTATTGATGGCTGTGCTAGAGTTGGGCAAGTAGCTAAGGCATTTGGTGTTTATGGGATAATGAGGTCCAAGAACGTGAAGCCAGATCGTGTTGTATTCAATGCACTTATTGCCGCATGTGCCCAGTCAGGAGCAGTGGATCGTGCTTTTGATGTGTTGGCAGAAATGGCAGCAGAAATACAGCCAATTGACCCAGATCACATAACTTTTGGTGCTTTGATGAAAGCATGTTCAAAAGCTGGCCAGGTTGAACGAGCACAAGATGTGTATAAGATGATACAAAAATATAACGTAAAGGGATCTCCAGAACTTTACACTATTGCCATTAATTCTTGCAGCCAATCGGGAGATTGGGAATTGGCACAAAGTGTATACATTGACATGACCCAGAAAGGGGTGCTCCCTGATGAGAAGTTATTGACTCACTTCACACAGATGCTTCTGAGTGCACTAATCGATGTTGCTGGGCATGCTAAAAAGCTGGATGCTGCATTTGAAGTCCTACAAGAAGCCCATAAAGGAGGAATACACGTTGGAATAATGTCATATAGCTCATTGATGGGTGCATGTAGCAATACAAGAAATTGGCAGAAAGCATTGGAGCTGTACGATTATATTAAGTCTCTTAAATTGGTGCCAACAGTTTCAACAGTAAATGCTTTGCTCACTGCACTTTGTGATGGAGATCAATTTCAGAGGGCTTTGGAGATTTTATCTGAAATGAAAGGGTTAGGATTGCGCCCAAACAGTATCACGTACTCATTACTTATAGTGGCAAGCGAGAAAAATGATGATATGGAAGCAGCTCAAATGCTCCTTTCTCAAGCCAAAAAGGATGGTGCTTCCCCTAATCTCGTCATGTGTCGATGCTTGATTGGAATGTGCCGGCGAAGATTTGAGAAGGCTTGCTTTGTTGGTGAACCAGTTTTATCTTTTGATTCTGGACGGCCACAAGTGGATAGTAAATGGACATCACTGGCCTTAATGGTGTATCGTGAAACAATTGGAGCTGGTGAGAAGCCTACTAGTGAAATATTGTCACAAATGCTGGGATGCTTGCAATTCCCCTGCGAAGAATCTATTAAAAACAGACTCGTTGAGAATCTGGGAGTAAGTGCTGAAACCTCAGAAAACTCAAATATCTGTTCATTAATGGATGGATTTGGTGAATATGATTCTCGTGCTTTGTCAATACTTGAGGAAGCTGCGTCCTATGGAGTTGTTCCATCTGTATCATTTAAAGTGAGCCCTATTGTGGTGGATGCTAAAGAAATGCATCCTTTCATTGCTGAGGTGAGCTTGCCTAAGTCTTACTATTCCTACAATGATGATTTCTGTTACATAAAAGAATATCCTTCTGCTGTAAGCAGCAGAGATCCATTTTATGTATACCTCCTAAGTGTTTTGAAAGGTCTCAAGAATAGACTAGCAGCAGGTGCAAGATTACCCAATACAATCATCTTATTGCCTATAGAGAAAACAGGCGTTTTGCTTCCCAAGGGGAAAAAGATTATTAACCTTTCAGGAAGAGTTGGCCAAGCAGTTGGAGCGTTATTGAGGAGGCTTCAGATTCCTTACAAGGGTAATGAATCATCTGGGAAGCTCAGAATTAATGGTCTAGCTCTGAAAATATGGTTCCAACCAAAACTTGCATCTCCATTCAGCGGAAAGCCAGGTGACTGGAGCTCATCCCAATCGCGATTAGGCAAAAGTATTAGCCACCAGCAGCGGAACATTCGAACTGGCAATCTATCTTTGGATTAA 3291 0.4148 MEVILCTNHLRHTSSFSFSFSTSFPPTQFLGSSTHTLRPKPKPKPKPLRSPNSSNNNFHHLFRFHSPRFLFKPSSFHSHPTIILFIVVTISAVSFIHYTLTNKNKNNNNSTQLRPHPHFALSPQFQTDNSLTEQQDEIKDLPFLNSSSSSSSSSAAVSVASVNDDDSNVFTVTDTFLPLPFKSTSLSDPDLPFTLIQFEENAAAAAAASSVTQNDALDEEHSEEKIELGSISNGFLFGESVREDLYMFYEANKKPANGTISSPGSWKPLSPNASFVNGNGFPSEIGNVTLKEHVEGVVPNSNYIGGYPAQGGSNNSRNGSRYLRNRERNYLDHNTNNVLPQNGHSIRVQAHQKNDRTKVYDDQKNDISEYLSKYNNLLKVGRLRECVELLKDTEKKGLLDMTKVYHAKFFNTCKRQKAVKEAFDYIRLIPNPTLSTFNMLMSVCTSSQDSERAFQVLQLLKEARLEPDCQLYTTLISTCAKSGKVDQMFEVFHKMVNSGVEPNILTYGALIDGCARVGQVAKAFGVYGIMRSKNVKPDRVVFNALIAACAQSGAVDRAFDVLAEMAAEIQPIDPDHITFGALMKACSKAGQVERAQDVYKMIQKYNVKGSPELYTIAINSCSQSGDWELAQSVYIDMTQKGVLPDEKLLTHFTQMLLSALIDVAGHAKKLDAAFEVLQEAHKGGIHVGIMSYSSLMGACSNTRNWQKALELYDYIKSLKLVPTVSTVNALLTALCDGDQFQRALEILSEMKGLGLRPNSITYSLLIVASEKNDDMEAAQMLLSQAKKDGASPNLVMCRCLIGMCRRRFEKACFVGEPVLSFDSGRPQVDSKWTSLALMVYRETIGAGEKPTSEILSQMLGCLQFPCEESIKNRLVENLGVSAETSENSNICSLMDGFGEYDSRALSILEEAASYGVVPSVSFKVSPIVVDAKEMHPFIAEVSLPKSYYSYNDDFCYIKEYPSAVSSRDPFYVYLLSVLKGLKNRLAAGARLPNTIILLPIEKTGVLLPKGKKIINLSGRVGQAVGALLRRLQIPYKGNESSGKLRINGLALKIWFQPKLASPFSGKPGDWSSSQSRLGKSISHQQRNIRTGNLSLD 1096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0172 1096 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC 227 1096 - -
Lal1g0172 1096 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 433 467 IPR002885 -
Lal1g0172 1096 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 503 537 IPR002885 -
Lal1g0172 1096 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 538 568 IPR002885 -
Lal1g0172 1096 Pfam Pentatricopeptide repeat domain 746 804 IPR002885 -
Lal1g0172 1096 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 758 792 IPR002885 -
Lal1g0172 1096 MobiDBLite consensus disorder prediction 30 53 - -
Lal1g0172 1096 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 723 757 IPR002885 -
Lal1g0172 1096 Coils Coil 768 788 - -
Lal1g0172 1096 Gene3D Tetratricopeptide repeat domain 658 816 IPR011990 GO:0005515
Lal1g0172 1096 Gene3D Tetratricopeptide repeat domain 517 657 IPR011990 GO:0005515
Lal1g0172 1096 Pfam Pentacotripeptide-repeat region of PRORP 583 733 IPR033443 -
Lal1g0172 1096 Pfam Pentacotripeptide-repeat region of PRORP 435 572 IPR033443 -
Lal1g0172 1096 MobiDBLite consensus disorder prediction 1063 1096 - -
Lal1g0172 1096 Gene3D Tetratricopeptide repeat domain 380 516 IPR011990 GO:0005515
Lal1g0172 1096 MobiDBLite consensus disorder prediction 1066 1096 - -
Lal1g0172 1096 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 610 644 IPR002885 -
Lal1g0172 1096 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 688 722 IPR002885 -
Lal1g0172 1096 TIGRFAM PPR: pentatricopeptide repeat domain 436 469 IPR002885 -
Lal1g0172 1096 TIGRFAM PPR: pentatricopeptide repeat domain 613 646 IPR002885 -
Lal1g0172 1096 TIGRFAM PPR: pentatricopeptide repeat domain 506 538 IPR002885 -
Lal1g0172 1096 TIGRFAM PPR: pentatricopeptide repeat domain 577 608 IPR002885 -
Lal1g0172 1096 TIGRFAM PPR: pentatricopeptide repeat domain 691 723 IPR002885 -
Lal1g0172 1096 TIGRFAM PPR: pentatricopeptide repeat domain 472 504 IPR002885 -
Lal1g0172 1096 TIGRFAM PPR: pentatricopeptide repeat domain 726 758 IPR002885 -
Lal1g0172 1096 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 468 502 IPR002885 -
Lal1g0172 1096 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 575 609 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0172 379 807 Glycosyltransferase AT1G05670 24.658 1.19e-28 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0172 - - gmx:100814164 1343.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0172 1 1078477 1093388 Lal1g0172 1 1078477 1093388 ECH