Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0118 ATGAGAGGCATCCTTCGGAGTTCAAAGGTGATTGCGACGAATCTACTCTTCAATGGAACAAGGATGAGCACCAATCATAATCGTGCATATAGCGTCATTCCTATGGTTATAGAACACTCTTCCAGAGGAGAAAGAGCTTATGATATCTTCTCTCGTCTTCTCAAAGAGCGCATCGTCTGCATCAATGGTCCCATCTCTGATGACACTGCACATGTTGTTGTTGCTCAGCTTCTCTTTCTTGAATCTGAAAACCCTTCCAAGCCTATTCATATCTACCTCAATTCCCCTGGTGGCGCCGTCACCGCTGGTCTTGCAATTTATGACACTATGCAGTACATTCGCTCTCCTATTAATACAATATGTTTGGGTCAAGCTGCGTCCATGGCTTCTCTACTATTGGCTGCGGGTGCCAAGGGTCAGAGGCGTGCTCTTCCAAATGCAACAATCATGATTCATCAGCCTTCGGGTGGTTATAGTGGCCAGGCAAAGGATATTGCAATTCATACGAAGCAGATTGTTCGGATTTGGGATTCTTTGAATGAATTGTACAAGAAGCATACAGGCCAACCAATTGACACTATTCAAAAGAATATGGATAGGGATTATTTTATGACTCCGGAAGAGGCAAAGGACTTTGGGATTATTGATGAGGTTATTGATCAGAGACCAACGGCATTGGTTTCTGATGCTGTTGCTAACGAAGGAAAAGATAAAGATTCACCTTAG 726 0.4353 MRGILRSSKVIATNLLFNGTRMSTNHNRAYSVIPMVIEHSSRGERAYDIFSRLLKERIVCINGPISDDTAHVVVAQLLFLESENPSKPIHIYLNSPGGAVTAGLAIYDTMQYIRSPINTICLGQAASMASLLLAAGAKGQRRALPNATIMIHQPSGGYSGQAKDIAIHTKQIVRIWDSLNELYKKHTGQPIDTIQKNMDRDYFMTPEEAKDFGIIDEVIDQRPTALVSDAVANEGKDKDSP 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0118 241 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 32 222 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lal1g0118 241 Pfam Clp protease 42 221 IPR023562 -
Lal1g0118 241 PRINTS Clp protease catalytic subunit P signature 48 63 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lal1g0118 241 PRINTS Clp protease catalytic subunit P signature 88 108 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lal1g0118 241 PRINTS Clp protease catalytic subunit P signature 119 136 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lal1g0118 241 PRINTS Clp protease catalytic subunit P signature 140 159 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lal1g0118 241 PRINTS Clp protease catalytic subunit P signature 197 216 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lal1g0118 241 Gene3D - 20 226 - -
Lal1g0118 241 CDD S14_ClpP_2 48 218 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lal1g0118 241 SUPERFAMILY ClpP/crotonase 40 222 IPR029045 -
Lal1g0118 241 ProSitePatterns Endopeptidase Clp histidine active site. 141 154 IPR033135 -
Lal1g0118 241 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 14 239 - -
Lal1g0118 241 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 14 239 IPR023562 -
Lal1g0118 241 ProSitePatterns Endopeptidase Clp serine active site. 119 130 IPR018215 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0118 Lal-Chr1 790285 792372 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0118 K01358 - gmx:100782585 392.889