Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0057 ATGGCTGTCGAGACTAATGATAAAACGAGTTTGCCACATGATTTTGGTGATGACGACGGGCCAGTAACTTTTAAACGATACACATCGACCAAGAAAAAACAATTGCATTCAGAATTGACGAAGTCAACTTCTAATAGCCTTGATGGGCAGTCTAATAGACAGAGTTCGAATGTGCCTTCTTCAAATGGCCAATCTTCTAGCGCCCCGAAGGGTGATGTTGTCCCATCTGCTAAGCCATCAGCCATGAAATCTTCTGTAGGAAACTCTAAACCGTCCAATTCACTTGTCAATCCTGCATCTGTTAAGTTGCCTGTAGCAAACTCAAGATCACATTCACTAAATGATAAAGCAAAGTCTGTTCCGGAACAAAAAACGTCCATTGATATTAAGGGGGAAACAAAATTTATCAAACATTGTACTAACGATTACGCTGAAGATTCAGAAGACGAGGAGGATAATAAACCATTAAGTGCTAGGTTGAAGGTGAACTCTAACAATGATAACAAAGCAACCCTGGTTGTTGCTAAGAAATCTTATCAAGACTCTGATGACGACGATGATATCCCCTTGTCAGCAAAGTTATTCCGGAATTCTAATGTTGGAACATCTAGCGGTAACTGTGATGACCCTGATGAGAAGAAGCTTATTTCAAAAGTTCAGAAAGAACTGCAAAATGGTTCCAGTGCTAGTATTAAACAGGAAAAACCATCTACAGTGCCATCTAAGAGGCCACTAGATAACAGTAATTCCATGCACTCTCAAGCTAAGAAGTCCAAGGTCTCAGATCCAGCTGCATCAATCAAAACTAAACAAGTCTCTATGAAATGTGAGCCGAAGGTGGAGGATGATGATGATGATGATATTCCTATTTCCCAGAGAATAAAGAAGTCGGCTACATCAGCTGATAAATCATCTTCCATAAATAAGAAGGCGGCTGTATCAGCTGATAAATCATCTTCGATAAAGAAGAATTTGACAAAGGTTACTAAAGTTAACAAGGCTGGTAAAACAGCTTTTAAGAAACAGCCAAAGAAGTTAAAAAAATCAGGCAAGGGTTCAGATTATTCCAAATCTATGAAATTTCTTCCTGGTTCTGGCGATGGACAGAAAAAATGGACTACTTTGGTTCACAATGGTGTCATTTTCCCTCCTCTTTACCAGCCTCATGGGGTAAAGATGCTCTATAAGGGGAAACCAGTTGATTTGACTCCTGAGCAAGAGGAGGTTGCTACAATGTATGCAGTCATGCGAGATACAGATTACATGCAGAAGGATAAGTTCAAAGAGAATTTCTGGAATGACTGGCGTAAGTTGCTAGGAAGAAATCATGTAATTCACAACTTGAAAGATTGTGACTTCACTCCAATCTATGACTGGTACCAAAGTGAAAAGGAAAAGAAGAAACAAATTACTACAGAAGAGAAAAAGGCCCTGAAGGAGGAGAAAATGAAACAGGAGGAGAAATTCATGTGGGCTATTGTCGACGGTGTTAAAGAGAAGGTTGGAAATTTTAGAGTTGAACCACCAGGATTGTTTCGAGGCCGTGGAGAGCATCCAAAGATGGGAAAATTGAAAAGACGCATTTGTCCTAGGGATATCGTCATTAATATTGGAAAGGATGCCCCTGTTCCTGAATGTCCTATTCCTGGTGAAAGATGGAAGGAGATAAGACATGACAATACGGTTACATGGTTAGCGTACTGGAGCGACCCTATCAATCCAAAGTTATTCAAATATGTGTTTCTGGCAGCTAGCAGTTCCTTGAAGGGACAAAGCGACAAGGAAAAGTACGAGAAAGCTAGGATGTTGAAGGATTATATAGAGAACATCAGGGCTGCATACACAAAAGATTTTACAAATAAAGATATCACAAAACAGCAGATAGCTGTTGCTACGTATCTTATTGATAAACTAGCTCTGAGGGCTGGCAATGAGAAGGATGATGATGAAGCTGACACTGTTGGTTGTTGCACATTAAAAGTAGAGAATGTAACAAGGGAAGCCCCCAACAAGTTGAAGTTCAACTTCCTTGGTAAAGATTCAATCAAGTATGAAAATACAGTTGAGGTTGAGCTTCCTGTTTATAATGCAATTTTGAAGTTCCAAAAAGAGAAAAGCCCTGGTGATGATCTTTTTGACATGCTGGATACAAGTAAATTAAATGCCCATCTGAAGGAACTCATGCCCGGCCTAACCGCAAAAGTCTTCCGTACATTTAATGCATCTATCACATTGGATGACATGCTGAATAAGGGAACTAAAGGTGGAGATGTTGGAGAAAAGATTGTTGTTTATCAGCATGCAAACAAACAGGTTGCAATCATTTGTAATCATCAACGTAGTGTTTCAAAATCTCACAGTGCACAAATGTCGAAGTTAAATGAAAAGATTGATGAACTTAAGGCTGTTCTGAAGGAGCTGAAAACAGATTTGGACAGGGCAAAGAAAGGAAAGTCCCCTTTAAAGAGTTCAGATGGAAAGACAAAACGGAACTTAAATCCTGAAGCACTAGAGAAAAAGATATCTCAAACCAATGCAAAAATCGTGAAAATGCAGCGTGATATGAAGACTAAAGAAGACCTAAAAACCGTGGCATTAGGCACGTCCAAGATAAACTACCTCGACCCCAGGATTACAGTTGCTTGGTGCAAGCGGCATGAGGTCCCTATTGAAAAGATTTTCAACAAATCACTGCTGGAAAAATTTAGTTGGGCAATGGATGTGGATCCTGACTTCAGATTCTGA 2745 0.3971 MAVETNDKTSLPHDFGDDDGPVTFKRYTSTKKKQLHSELTKSTSNSLDGQSNRQSSNVPSSNGQSSSAPKGDVVPSAKPSAMKSSVGNSKPSNSLVNPASVKLPVANSRSHSLNDKAKSVPEQKTSIDIKGETKFIKHCTNDYAEDSEDEEDNKPLSARLKVNSNNDNKATLVVAKKSYQDSDDDDDIPLSAKLFRNSNVGTSSGNCDDPDEKKLISKVQKELQNGSSASIKQEKPSTVPSKRPLDNSNSMHSQAKKSKVSDPAASIKTKQVSMKCEPKVEDDDDDDIPISQRIKKSATSADKSSSINKKAAVSADKSSSIKKNLTKVTKVNKAGKTAFKKQPKKLKKSGKGSDYSKSMKFLPGSGDGQKKWTTLVHNGVIFPPLYQPHGVKMLYKGKPVDLTPEQEEVATMYAVMRDTDYMQKDKFKENFWNDWRKLLGRNHVIHNLKDCDFTPIYDWYQSEKEKKKQITTEEKKALKEEKMKQEEKFMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRICPRDIVINIGKDAPVPECPIPGERWKEIRHDNTVTWLAYWSDPINPKLFKYVFLAASSSLKGQSDKEKYEKARMLKDYIENIRAAYTKDFTNKDITKQQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVTREAPNKLKFNFLGKDSIKYENTVEVELPVYNAILKFQKEKSPGDDLFDMLDTSKLNAHLKELMPGLTAKVFRTFNASITLDDMLNKGTKGGDVGEKIVVYQHANKQVAIICNHQRSVSKSHSAQMSKLNEKIDELKAVLKELKTDLDRAKKGKSPLKSSDGKTKRNLNPEALEKKISQTNAKIVKMQRDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLEKFSWAMDVDPDFRF 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0057 914 MobiDBLite consensus disorder prediction 158 175 - -
Lal1g0057 914 Coils Coil 783 817 - -
Lal1g0057 914 Pfam Eukaryotic DNA topoisomerase I, DNA binding fragment 371 582 IPR008336 GO:0003677|GO:0003917|GO:0006265
Lal1g0057 914 CDD Topo_IB_C 591 784 IPR013500 GO:0003677|GO:0003917|GO:0006265
Lal1g0057 914 Pfam C-terminal topoisomerase domain 846 914 IPR025834 -
Lal1g0057 914 PANTHER DNA TOPOISOMERASE I 144 914 - -
Lal1g0057 914 Pfam Eukaryotic DNA topoisomerase I, catalytic core 585 810 IPR013500 GO:0003677|GO:0003917|GO:0006265
Lal1g0057 914 MobiDBLite consensus disorder prediction 10 38 - -
Lal1g0057 914 CDD Topoisomer_IB_N 371 583 - -
Lal1g0057 914 SMART topeu 511 887 IPR013499 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Lal1g0057 914 Gene3D DNA Topoisomerase I, domain 2 367 582 IPR013030 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Lal1g0057 914 Gene3D - 387 470 IPR013034 GO:0003917|GO:0006265
Lal1g0057 914 MobiDBLite consensus disorder prediction 334 358 - -
Lal1g0057 914 MobiDBLite consensus disorder prediction 293 319 - -
Lal1g0057 914 PANTHER DNA TOPOISOMERASE I 144 914 - -
Lal1g0057 914 SUPERFAMILY Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment 369 584 IPR036202 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Lal1g0057 914 Gene3D - 734 914 IPR014727 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Lal1g0057 914 ProSitePatterns Eukaryotic DNA topoisomerase I active site. 860 878 IPR018521 GO:0003677|GO:0003917|GO:0006265
Lal1g0057 914 Coils Coil 461 488 - -
Lal1g0057 914 MobiDBLite consensus disorder prediction 1 319 - -
Lal1g0057 914 PRINTS Eukaryotic DNA topoisomerase I signature 511 520 IPR001631 GO:0003677|GO:0003917|GO:0006265
Lal1g0057 914 PRINTS Eukaryotic DNA topoisomerase I signature 627 646 IPR001631 GO:0003677|GO:0003917|GO:0006265
Lal1g0057 914 PRINTS Eukaryotic DNA topoisomerase I signature 650 664 IPR001631 GO:0003677|GO:0003917|GO:0006265
Lal1g0057 914 PRINTS Eukaryotic DNA topoisomerase I signature 672 688 IPR001631 GO:0003677|GO:0003917|GO:0006265
Lal1g0057 914 PRINTS Eukaryotic DNA topoisomerase I signature 730 744 IPR001631 GO:0003677|GO:0003917|GO:0006265
Lal1g0057 914 PRINTS Eukaryotic DNA topoisomerase I signature 867 878 IPR001631 GO:0003677|GO:0003917|GO:0006265
Lal1g0057 914 MobiDBLite consensus disorder prediction 115 144 - -
Lal1g0057 914 MobiDBLite consensus disorder prediction 220 268 - -
Lal1g0057 914 MobiDBLite consensus disorder prediction 39 71 - -
Lal1g0057 914 SUPERFAMILY DNA breaking-rejoining enzymes 585 911 IPR011010 GO:0003677
Lal1g0057 914 Gene3D Topoisomerase I; Chain A, domain 3 585 733 IPR014711 GO:0003677|GO:0003917|GO:0006265
Lal1g0057 914 MobiDBLite consensus disorder prediction 81 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0057 Lal-Chr1 427005 434741 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0057 K03163 - gmx:100799837 1372.45