LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal1g0055	ATGGCTACTGCTGCTGTGATTGGACTTAGTGGAGGAAAGAGGCTCTTGAGTTCATCTCACCATTACTCTGATGATATTACAGAAAAGCTTTTCTATGGAAGTGATTTTGGATCAGTACACTATCAAACTGCTCAAACAAAATCTGTTATAATTGCTAAGAAATCATCAAATTACACACCGACTTTTCCAAAAAGCAACAACGAGAAACAGATTCAGTCCATCAAGGCTCTCAAGAAGCATGTTGTTGATGCCCCAATTATTGCAGATCAGTGGTTTGAGGGATATAATAATTGTAATGACTTAGAGGTGGAAAGTTCTGACAATGCACTTCTTTTGCTGCAGAAGTCAATGCTTGAAAAGCAATGGAACCTTTCATTTAAGAAGAGACTGTTAAGTGAGAAATCGAGAAGAAAAAAAATGCATAGGAAAGTGACTGTGACTTGTTCCGGTGTGTCTGCAAGGCAAAGAAGAATGAGTACTAAGAGGAAGACTCTCGGTAAAACCGGCTCGGCAATGGTACAACCTTGTATGCAGTTGAGGTCCATAATCAGTCCTGAGCTGCTTCAAAACCGGTTGAAGGGTTATGTGAAAGGAGTTGTAAGTGAGGAATTGCTCTCTCATGCAGAAGTTGTGAGCCTATCAGAAAAAATAAAAGTTGGGCTTTCCTTAGATGAGCACAAATGCAGACTGAAGGAAAGGCTAGGATGTGAACTCTCAGATGATCAAATTGCAATTTCGCTAAAGATTTCTCGTTCTGAACTGCGAGCAAAAATGATAGAGTGCTCTTTGGCTAGAGAAAGGTTGACTATGAGCAATGTTCGCTTAGCCATGTCTATTGCTCTAAGATATGATAACCTGGGTGCTGAAATGGCTGACCTTGTTCAGGGTGGCTTGATTGGACTACTTTGTGGGATCGAGAAGTTTGATTCGTCTAAAGGGTTCAAGATTTCAACTTATGTTTATTGGTGGATACGTCAGGGTGTTTCAAGAGCTTTAGCTGAGAATTCAAGAACATTAAGATTGCCTACTTATTTGCATGAGAGGATATCTTTGATCCGCAATGCTAAGTTTAGACTAGAAGATAGAGGCATCACTCCAATTATTGATAGGATTGCGAAAAGCCTTAATATGTCTCAAAAGAAAGTTAAAAATGCTACTCAGGCAATCAATAAAGTTATCTCACTTGACAGGGAAGCATTTCCCTCTTTGAATGGTCTTCCAGGAGAAACTCATCATAGTTATATTGCAGATAGCCACCTTGAGAATATCCCATGGAATGGAGTAGATGAGTGGGCATTAAAGTATTTATGCTCTGAACTTTCACAGGATGAAGTGAACAGACTCATTAATGTGACCCTTGTTGAACGAGAAAGAGAAATTATCCGTCTTTATTATGGATTGGGTAAAGAATGTCTTACATGGGAGGACATTAGTAAACGGATTGGGTTGTCAAGAGAAAGAGTGAGACAAGTTGGACTTGTTGCATTGGAGAAACTAAAACATGCTGCGAGGAAGAAAGACATGGAGGCTATGCTATTGAATTGA	1545	0.3955	MATAAVIGLSGGKRLLSSSHHYSDDITEKLFYGSDFGSVHYQTAQTKSVIIAKKSSNYTPTFPKSNNEKQIQSIKALKKHVVDAPIIADQWFEGYNNCNDLEVESSDNALLLLQKSMLEKQWNLSFKKRLLSEKSRRKKMHRKVTVTCSGVSARQRRMSTKRKTLGKTGSAMVQPCMQLRSIISPELLQNRLKGYVKGVVSEELLSHAEVVSLSEKIKVGLSLDEHKCRLKERLGCELSDDQIAISLKISRSELRAKMIECSLARERLTMSNVRLAMSIALRYDNLGAEMADLVQGGLIGLLCGIEKFDSSKGFKISTYVYWWIRQGVSRALAENSRTLRLPTYLHERISLIRNAKFRLEDRGITPIIDRIAKSLNMSQKKVKNATQAINKVISLDREAFPSLNGLPGETHHSYIADSHLENIPWNGVDEWALKYLCSELSQDEVNRLINVTLVEREREIIRLYYGLGKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKDMEAMLLN	514

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal1g0055	514	Pfam	Sigma-70, region 4	452	501	IPR007630	GO:0003700\|GO:0006352\|GO:0006355
	Lal1g0055	514	CDD	Sigma70_r4	452	500	-	-
	Lal1g0055	514	ProSitePatterns	Sigma-70 factors family signature 1.	292	305	IPR000943	GO:0003700\|GO:0006352\|GO:0006355
	Lal1g0055	514	SUPERFAMILY	Sigma2 domain of RNA polymerase sigma factors	191	338	IPR013325	GO:0003700\|GO:0006352\|GO:0006355
	Lal1g0055	514	Gene3D	-	434	509	IPR036388	-
	Lal1g0055	514	SUPERFAMILY	Sigma3 and sigma4 domains of RNA polymerase sigma factors	452	506	IPR013324	-
	Lal1g0055	514	PANTHER	RNA POLYMERASE SIGMA FACTOR SIGA	1	513	-	-
	Lal1g0055	514	Gene3D	RNA Polymerase Primary Sigma Factor	51	340	-	-
	Lal1g0055	514	Pfam	Sigma-70 region 2	271	337	IPR007627	GO:0003700\|GO:0006352\|GO:0006355
	Lal1g0055	514	PRINTS	Major sigma-70 factor signature	292	305	IPR000943	GO:0003700\|GO:0006352\|GO:0006355
	Lal1g0055	514	PRINTS	Major sigma-70 factor signature	316	324	IPR000943	GO:0003700\|GO:0006352\|GO:0006355
	Lal1g0055	514	PRINTS	Major sigma-70 factor signature	453	465	IPR000943	GO:0003700\|GO:0006352\|GO:0006355
	Lal1g0055	514	PRINTS	Major sigma-70 factor signature	473	488	IPR000943	GO:0003700\|GO:0006352\|GO:0006355
	Lal1g0055	514	PRINTS	Major sigma-70 factor signature	488	499	IPR000943	GO:0003700\|GO:0006352\|GO:0006355
	Lal1g0055	514	PANTHER	RNA POLYMERASE SIGMA FACTOR RPO	1	513	-	-
	Lal1g0055	514	Pfam	Sigma-70 region 3	347	417	IPR007624	GO:0003700\|GO:0006352\|GO:0006355
	Lal1g0055	514	TIGRFAM	sigma70-ECF: RNA polymerase sigma factor, sigma-70 family	264	502	IPR014284	GO:0003700\|GO:0006352\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal1g0055	Lal-Chr1	414114	419492	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal1g0055	K03086		-	gmx:100801884	777.319

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal1g0055	1	414114	419492	Lal1g0055	1	414114	419492	ECH