Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lal1g0044 | ATGGATGGTTATGAAGCTACAAGGACTGTGTTTTCAAGGATCCAAAACCTGGACCCTGAAAATGCATCAAAAATCATGGGTATGCTTCTGATTCAAGACCATGGTGAGAAAGAAATGATTAGGCTAGCATTTGGTCCAGAAGCCCTAGTTCATTCAGTGATTGTTAAAGCTAGAAAGGACTTGGGATTACCCTCTAACTCTCAACCTACGCCTACACCTACACCTTCTACTCCTCCATCACCATCTCCATTCCTTCCAAGGCAAAGTTCCACAACTTCTGCTTCTAGGCTCGGTGGAATTATTAGCCTTCCTCCTCCAGCTTTAACTATTCCAAACACAACCAGTTCTAACTCACCTTCTTGGGCTACTATGTCTGAGCTTAACAACAACCCAGATGAGTTAATCATGAGTCCTAATAATTTGGTTGTTGGGTCTAATAGCACTTCTTCATCATCTTCCTTACCCTTTTATCATCACCATGCAAATGGAGGAGTTTCAGATCCAATTGATGAGTTACAACTTCAAGACCAGCTCTCTTTCTTGAATGATGGTTCTCCTCACAATAACCAAGATTTATTCTACCCTCATCAGTCTGACTTGTCTTCAAGTCCAACTAGTGGTGCTGACCCTAGTAATATTTTCCCTTCATATGGTTGGGGAGGGTCTTTTCATAGAAGGAGTTGTTCTGTGAATGATGCTTGTTTGGGTTCTGAGGACTCTAATTCAGGATTTGGCTGGAAACCTTGTCTTTACTTTGCTAGAGGGTACTGCAAAAATGGTACTAGTTGTAGGTTCCTTCATGGAGGAGGAGGAATTGGAGATGCTGATGCTGCTGCAATGATTGGTTCTCCTAATAAGATTGAGATGATGGATGAGCTTCTCAGATCCAAGACTGCACAACAGCAAAGACTTGCTGCTGCTTCTCAACTCATGGCATCTTCTTTTCCATACTCACCAAAGTGCATGAATTTTCTGTTACAGCAGCAACAAAATGATTCTCCAAGAGGGGCAGTTGCAGCTCTTATGATGAATGAAGAGTTGCTCAAGTTTGGAAGATCAAGGCTTGAAAGGAATGATTTTTCTTTGAATAGTCCTGGAATTGTTAACCCAGCTTCAAGGCAGATCTACTTGACTTTTCCAGCAGATAGCACTTTTAGAGAGGAAGATGTTTCTAACTACTTCAGCATTTATGGTCCTGTTCAGGATGTGAGGATCCCCTACCAGCAGAAACGTATGTTTGGATTTGTTACCTTTGTTTATCCTGAGACAGTGAAGCTCATTCTATCTAAAGGGAACCCTCATTTTGTGTGTGATGCTAGAGTCCTTGTTAAGCCTTACAAGGAGAAAGGCAAAGTCCTAGACAAGAAGCAACAAGTAGATAGGGGAGATTTTTCACCTTGTGGTACTCCTACTGGACTAGATGCTAGAGACCAATTTGATCTCCAACTTGGAGGCAGAATGTTTTACAATACTCAAGACATGCTGTGGAGGAGGAAGTTGGAAGAGCAAGCTGATTTTCAGCAAGCTCTTGAGCTCCAAAGTAGAAGGTTAATGAGTCTGCAACTTCTTGACATCAGGAAGCAACACCACCGCACACTTTCAACCGGAAGTCCAATTCCATCCCCTACTCACTCTCCTAGTATGTTCAATCAAAACCTTGTTTTCCCTTCGTTTCACGGCAGCTCGGAGACCCCGAAGGATAATGGTTCTAGTTCAGCTCCAGTTAGTAGTACTGTATCAGTGAACACTTCCGTTGGCAAGGAAGTTGTTGGTAATGGGGAGAATGGATATAATGAAGGCAATGGCAAGAGCTCAAGTCATGAAGAGTGTGATTTGCAAGAATGTTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCTACTAAAGCTGCTGCTGGTGATGACTACATGGCTGCCTTCTCCAATGGACCTAATGAGGCCATTGATTCTGATGCCTCAGCTGCATCTGCCAACTCTAAATTTGGTATTAGCACATTACTTCCATCACCATCTGGTTTGGACATGGGCTCTTTCAAATCCTTTAATTGCCAAATCCCAAGGTTCACTTCTGGCCATGGAACTATTGGCATGTTTGCCGGCACCGGCATTGGCATTTAG | 2121 | 0.4305 | MDGYEATRTVFSRIQNLDPENASKIMGMLLIQDHGEKEMIRLAFGPEALVHSVIVKARKDLGLPSNSQPTPTPTPSTPPSPSPFLPRQSSTTSASRLGGIISLPPPALTIPNTTSSNSPSWATMSELNNNPDELIMSPNNLVVGSNSTSSSSSLPFYHHHANGGVSDPIDELQLQDQLSFLNDGSPHNNQDLFYPHQSDLSSSPTSGADPSNIFPSYGWGGSFHRRSCSVNDACLGSEDSNSGFGWKPCLYFARGYCKNGTSCRFLHGGGGIGDADAAAMIGSPNKIEMMDELLRSKTAQQQRLAAASQLMASSFPYSPKCMNFLLQQQQNDSPRGAVAALMMNEELLKFGRSRLERNDFSLNSPGIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILSKGNPHFVCDARVLVKPYKEKGKVLDKKQQVDRGDFSPCGTPTGLDARDQFDLQLGGRMFYNTQDMLWRRKLEEQADFQQALELQSRRLMSLQLLDIRKQHHRTLSTGSPIPSPTHSPSMFNQNLVFPSFHGSSETPKDNGSSSAPVSSTVSVNTSVGKEVVGNGENGYNEGNGKSSSHEECDLQECLEHNLPDSPFASPTKAAAGDDYMAAFSNGPNEAIDSDASAASANSKFGISTLLPSPSGLDMGSFKSFNCQIPRFTSGHGTIGMFAGTGIGI | 706 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lal1g0044 | 706 | Gene3D | - | 236 | 333 | - | - | |
| Lal1g0044 | 706 | Gene3D | - | 378 | 452 | IPR012677 | - | |
| Lal1g0044 | 706 | MobiDBLite | consensus disorder prediction | 532 | 606 | - | - | |
| Lal1g0044 | 706 | CDD | RRM_AtC3H46_like | 375 | 444 | IPR034365 | - | |
| Lal1g0044 | 706 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 373 | 449 | IPR000504 | GO:0003723 | |
| Lal1g0044 | 706 | MobiDBLite | consensus disorder prediction | 532 | 589 | - | - | |
| Lal1g0044 | 706 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 385 | 430 | IPR000504 | GO:0003723 | |
| Lal1g0044 | 706 | SMART | c3hfinal6 | 245 | 269 | IPR000571 | GO:0046872 | |
| Lal1g0044 | 706 | MobiDBLite | consensus disorder prediction | 107 | 155 | - | - | |
| Lal1g0044 | 706 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 248 | 268 | IPR000571 | GO:0046872 | |
| Lal1g0044 | 706 | ProSiteProfiles | Zinc finger C3H1-type profile. | 243 | 270 | IPR000571 | GO:0046872 | |
| Lal1g0044 | 706 | SMART | rrm1_1 | 374 | 444 | IPR000504 | GO:0003723 | |
| Lal1g0044 | 706 | MobiDBLite | consensus disorder prediction | 68 | 85 | - | - | |
| Lal1g0044 | 706 | SUPERFAMILY | RNA-binding domain, RBD | 385 | 466 | IPR035979 | GO:0003676 | |
| Lal1g0044 | 706 | MobiDBLite | consensus disorder prediction | 61 | 155 | - | - | |
| Lal1g0044 | 706 | PANTHER | RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN-RELATED | 1 | 696 | - | - | |
| Lal1g0044 | 706 | PANTHER | RNA-BINDING (RRM/RBD/RNP MOTIFS) | 1 | 696 | - | - | |
| Lal1g0044 | 706 | SUPERFAMILY | CCCH zinc finger | 246 | 268 | IPR036855 | GO:0046872 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lal1g0044 | Lal-Chr1 | 333563 | 338211 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lal1g0044 | - | - | gmx:100801341 | 988.023 |