Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0031 ATGAAAGGGATGGTGAAGTTTGCAGGATATTCCTTCCCATTTTCATTTCCTCCCATCACTTGTATTATCACTCTAAACACTTCCACATTCTCTCATAGGAGTTTCTGTAGGTCAATGTTCCTTTCTGCTGCTTACACTCAGAAACAACAATCATATCGTAAATCTGAATCTGGGGTTGTTGCAAAATGCTATCTTCCTCCTTTGTTTAGTGTTGCTCCAATGATGGACTGGACAGACAATCACTATAGGACTCTAGCACGCATCATATCAAAACATGCTTGGCTCTACACGGAGATGGTTGCCGCTGAAACAATTGTTCATCAAAAGGACAATCTGGATAGATTCTTGGGATTTTCTCCTGACCAACATCCCATTGTGCTTCAAATTGGAGGGAGTAATATTGAAAATTTAGCAAAAGCAACTGAGCTTTCTAATGCTTATTGCTATGATGAGATCAACTTAAACTGTGGATGCCCTAGTCCAAGAGTAGCTGGACATGGGGGCTTTGGTGCGAGTCTTATGCTTGACCCAAAGTTTGTTGCTGAGGCTATGTCAGCAATTGCTGCCAACACAAATGTACCTGTCAGTGTCAAATGTCGAATTGGTGTGGATGATCATGATTCTTATGATGAGCTGTGTGATTTCATATGCATGGTTTCTTCTCTATCGCCCACTAAGCATTTCATAATTCACTCAAGGAAGGCACTGCTCAATGGCATTAGCCCGGCTGAAAACCGGAGTATTCCTCCACTGAAATATGAATACTTTTATGGTCTCTTACGCGACTTTCCTAACTTAACATTTACAATCAATGGTGGTATTACTAGTGTTGATGAGGTCAATGCTGCTCGAGAAGCTGGGGCTCATGGTGTTATGATTGGACGTGCAGCATACAATAACCCTTGGCATATTTTGGGACATGTTGATACTGCAATTTACGGTGAACCTAGCACTCGTCTTACACGTCGTCAGGTGCTTGAAAAATATCAGTACTATGGGGACTCGGTGTTGGGAAAATATGGACATAGGCCAACTGTGCGAGATATCGTGAAGCCCTTACTCAATCTTTTCCATTCAGCGCCAGGCAATGGACTTTGGAAGCGCAAAGCAGATGCTGCTTTTCGAAATTGCACGACAATCAAATCATTTTTTGAAGAAACTCTTGTTGCAATTCCTGAGTCGGTGTTAGATTCGCCTGTCGCTGAACCATCTCCTGGCCGTGAAGATCTTTTTGCTAACATAGACATCTTGCTGCCTGCTCCATACGGAACAAGAGAAGAGATTATTATTTGCGCTTAG 1299 0.4242 MKGMVKFAGYSFPFSFPPITCIITLNTSTFSHRSFCRSMFLSAAYTQKQQSYRKSESGVVAKCYLPPLFSVAPMMDWTDNHYRTLARIISKHAWLYTEMVAAETIVHQKDNLDRFLGFSPDQHPIVLQIGGSNIENLAKATELSNAYCYDEINLNCGCPSPRVAGHGGFGASLMLDPKFVAEAMSAIAANTNVPVSVKCRIGVDDHDSYDELCDFICMVSSLSPTKHFIIHSRKALLNGISPAENRSIPPLKYEYFYGLLRDFPNLTFTINGGITSVDEVNAAREAGAHGVMIGRAAYNNPWHILGHVDTAIYGEPSTRLTRRQVLEKYQYYGDSVLGKYGHRPTVRDIVKPLLNLFHSAPGNGLWKRKADAAFRNCTTIKSFFEETLVAIPESVLDSPVAEPSPGREDLFANIDILLPAPYGTREEIIICA 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0031 432 SUPERFAMILY FMN-linked oxidoreductases 69 369 - -
Lal1g0031 432 Pfam Dihydrouridine synthase (Dus) 71 376 IPR035587 -
Lal1g0031 432 Gene3D Aldolase class I 65 303 IPR013785 -
Lal1g0031 432 CDD DUS_like_FMN 69 302 IPR035587 -
Lal1g0031 432 ProSitePatterns Uncharacterized protein family UPF0034 signature. 152 171 IPR018517 GO:0008033|GO:0017150|GO:0050660
Lal1g0031 432 PANTHER TRNA-DIHYDROURIDINE SYNTHASE 60 430 - -
Lal1g0031 432 Gene3D - 304 380 - -
Lal1g0031 432 PANTHER FMN-LINKED OXIDOREDUCTASES SUPERFAMILY PROTEIN 60 430 IPR004653 GO:0002943|GO:0017150
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0031 Lal-Chr1 242755 247382 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0031 K05539 - gmx:100779457 699.893