Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1467 ATGTGTAGCAATCGATGTGTTCAACAACACGTGTTCTCTCTGTTGCAGAGCTGCAACAATATAAGAAATCTCATTCAAATCCACACCCAAGTAGTCCTCAACGGCCTCTCTCAAAAGAACAATTTTCTCACCAAGCTTCTATCTTTCTATGTACTTTCTGGTCATCTTCAACATGCTCTCAATCTTTTCTCTAAAATCAATAACCCAACTACCACACTTTGGAACCAGATTATTAGAGGCTATGCTCGCACCCAAATGCCTTGGAAATCTGTGCAATTTTATAAACAAATGGTTTCAGCTGAGGTTGACCCTGATGGGTTCACATACTCCTTTCTTTTGAGTGCATGTGCGCGAGGTGGGTTGATAAGAGAAGGGGAACAGGTGCACGGGGCAATTTTGGTAAAAGGGTATCGCTCTAATGTGTTTGTGGACACAAATTTGGTCAATTTATATGCCGGGGGTGGTGCTGTTGAGAAAGCACGCCAAGTGTTTGATAATATGAGTGAGAGAAGTATTGTTACCTGGAATTCTATACTTGCTGGGTATATTAGATGCTGTGATTTTGATGGAGCAAGAAGGGCTTTTGATGAGATGCCAAGTAGGAATGTTGTGTCTTGGACGACCATGATTTCTGGGTGTGCTCAGAATGGGCAGTGTAAACAGGCTTTGTTATTATTTGGTGAGATGAGGAGAGCACGTGTGGAATTGGACCAGGTTTCATTGGTGGCAGCTTTATCAGCATGTGCTGAATTAGGGGACCTGAAGTTGGGAAGATGGATACACTGGTATGTTCAACAGAGATTTGTTGTTAGGAACCAGCTGCAGCCTTTGGTGCGTTTGAGTAATGCACTGATACACATGTATGCCAGTTGTGGAATCATCGATGAAGCTTATCGGGTGTTTACCGCGATGCCTCAGAAAAGCACCGTGTCGTGGACTAGCATCATCACTGCTTTCGCAAAACAAGGCCTTGGGAAGGAAGCCCTTGATATGTTTAAGACTATGATAAGTGATGGTATGCGAGTATATGAAGTAAGACCTGATGAAATAACCTTCCTTGGAGTTCTTTGTGCTTGCAGCCATGCAGGATTTGTTGACGAAGGACACCGAATTTTTGTGTCCATGAACCAAACTTGGGGAATCAGCCCAGCAATTGAACACTATGGATGCATGGTTGATCTCTTGAGTCGTGCTGGTTTCTTAGACGAAGCACGTGGACTTATTGAAACTATGCCTTTAAAGCCAAATGATGCAGTATGGGGAGCCCTTCTCGGTGGTTGTCGAATACACAAGAATTCGGAACTAGCATCAGGAGTGGCAAACAAGTTAATAGCCGAGCTCAACACGGATCAAGCTGCAGGGTATCTTGTGCTCCTGTCAAACATATATGCTTTTGCTAAAAGGTGGCAGGATGTGATTACTGTGAGACAGAAAATGATTGTAATGGGTGTTAAAAAACCTCCAGGTCATAGTTGGATCCAGATTAATGGAGTTGTCCATGATTTTATGGCTGGTGAAATGACTCATAAGCATTCATCTTTTATCTATGAAATCCTTTGTGAAATCACCAAGCAAACCCATCAGGAAGGTTATGAACCTGACATAGCTGAGATAGTGTTCTTCAACACATTATGA 1635 0.4281 MCSNRCVQQHVFSLLQSCNNIRNLIQIHTQVVLNGLSQKNNFLTKLLSFYVLSGHLQHALNLFSKINNPTTTLWNQIIRGYARTQMPWKSVQFYKQMVSAEVDPDGFTYSFLLSACARGGLIREGEQVHGAILVKGYRSNVFVDTNLVNLYAGGGAVEKARQVFDNMSERSIVTWNSILAGYIRCCDFDGARRAFDEMPSRNVVSWTTMISGCAQNGQCKQALLLFGEMRRARVELDQVSLVAALSACAELGDLKLGRWIHWYVQQRFVVRNQLQPLVRLSNALIHMYASCGIIDEAYRVFTAMPQKSTVSWTSIITAFAKQGLGKEALDMFKTMISDGMRVYEVRPDEITFLGVLCACSHAGFVDEGHRIFVSMNQTWGISPAIEHYGCMVDLLSRAGFLDEARGLIETMPLKPNDAVWGALLGGCRIHKNSELASGVANKLIAELNTDQAAGYLVLLSNIYAFAKRWQDVITVRQKMIVMGVKKPPGHSWIQINGVVHDFMAGEMTHKHSSFIYEILCEITKQTHQEGYEPDIAEIVFFNTL 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1467 544 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 171 201 IPR002885 -
Lal19g1467 544 TIGRFAM PPR: pentatricopeptide repeat domain 310 340 IPR002885 -
Lal19g1467 544 TIGRFAM PPR: pentatricopeptide repeat domain 204 237 IPR002885 -
Lal19g1467 544 TIGRFAM PPR: pentatricopeptide repeat domain 173 204 IPR002885 -
Lal19g1467 544 Pfam PPR repeat 145 171 IPR002885 -
Lal19g1467 544 Pfam PPR repeat 387 411 IPR002885 -
Lal19g1467 544 Pfam PPR repeat 310 339 IPR002885 -
Lal19g1467 544 Pfam PPR repeat 282 307 IPR002885 -
Lal19g1467 544 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 70 104 IPR002885 -
Lal19g1467 544 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 105 139 IPR002885 -
Lal19g1467 544 Pfam PPR repeat family 69 118 IPR002885 -
Lal19g1467 544 Pfam PPR repeat family 201 249 IPR002885 -
Lal19g1467 544 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Lal19g1467 544 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 202 236 IPR002885 -
Lal19g1467 544 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 308 342 IPR002885 -
Lal19g1467 544 Pfam E motif 430 494 IPR046848 -
Lal19g1467 544 PANTHER OS09G0411600 PROTEIN 4 523 - -
Lal19g1467 544 Gene3D Tetratricopeptide repeat domain 341 531 IPR011990 GO:0005515
Lal19g1467 544 Gene3D Tetratricopeptide repeat domain 171 266 IPR011990 GO:0005515
Lal19g1467 544 Gene3D Tetratricopeptide repeat domain 267 340 IPR011990 GO:0005515
Lal19g1467 544 Gene3D Tetratricopeptide repeat domain 9 170 IPR011990 GO:0005515
Lal19g1467 544 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 4 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1467 Lal-Chr19 17195866 17197500 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1467 13 534 Glycoside Hydrolase AT3G49170 32.075 1.26e-87 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1467 - - aip:107610465 830.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1467 19 17195866 17197500 Lal19g1467 19 17195866 17197500 ECH