Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1455 ATGAATAATCCTGTTTTGATTGGAGAGCTAGGGGTTGGCAAAACAGTCGTGGTAGATGGTTTGGCACAAAGGATTGTTATAAGTGATGTTCCTAGAAATCTTTCTGAAGTTAGTCTTATTGCATTGGACATGGGAGCATTGGTTGTTGGGGCCAAGTATATGGGAGAATTTGAAGAGAGGTTAAAGGCAGTTTTGAAAGAAGTAGAAGAGGCTCAGGGGAAAATTATTCTCTTTATTGATGAAATTCATTTGGTACTTTGTGCGGTTAGAACTGAAGGATCTATGGATGTTATTAAACTCTTCAAGCCTATGCTTGCTCGTGGCCAACTTCGATGCATTGGTGCTACCACTATGGAGGAGTACACAGAGTACGTTGAAAAGGATGCAACATTTGAAATAAGGTTCCAACAAGTTTATATGCCTGAAACTAGTGTGGTTGACACCATTAGTATCCTTCGTGCGCTAACGGTGCGTTATTCTAAACAATCTTGTTTCTTTCTTTGTTCCATTCTCACAAAGGTTCCATCTTTATCAACCAAAGAAGATTCTCAAATTGGAGATTTGTTGAAGGAAGATGTTGTTGCCACTTCAAGGGTTAGATCAGAGGTTAAGAAGTTTCGCGGGAAAGAAGGGAAAAAGGCTGAGAGTGCCACTGACTTGGTTGAGCAAGCTGGGAAGCTTGATCCGGTGATTGGGCGCCACGATGAGGGAAGCTGGCTGAACCTAGAGCGTTATGAAGCACATCATGGTATTCGGATTCAGGATCGTGCTCTGGTTGTTGCTGCTCAATTGTCCAGTCGCTACATAACTGGACGTCATCTTCCTGATAAGGCAATTGATTTAGTTGATGAAGCTTGTGCAAATGTGAGGGTTCAGCTTGATAGTGAGCATGAGGAAATTGATAACCTTGAAAGAAAGGGGATGCAACTTGAAGTGGAGCTTCATGCTATGGAGAAAGAGAAGGACAAAGCTAACAAAGCCCGTCTTGTCGAAGTAAGGAAGGAACTTGATGACTTAAGATACAAACTACAACCTTTGATGATGAAGTACAGAAAAGAGAAGGAAAGGGTTGATGAGATTCAAAGGCTTAAACAGAAAAAAAAGGAGCTTATCTTTGCCCTACAAGAGGTTGGGAGAAGATATGGTCTAGTTAGAGCCGTAGACTTTCTATACGATGCGATTCAAGGGTTGGAAACTGCAATCCAACAACTTGAAGGGAGCATTGAGGAGAACTTAATGCTCACAGAAACTGTAGGACCAGAGCAGATAGCAGAGGTTGTGAGCCGTTGGATTAGGATACCAGTCACAAGGCTTGGTCAAAACGAGAAAGATAGGCTCATTGGACTTGGTGACATATTGCACCATAGAGTTTCTGGACAGGACCAAGCAGTTAATGTTGTTGCTGAGTCTGTGTTGAGATCAAGAGTTGGGCTAGGAAGGCCACAACAACCAACTGGTTCATTCTTGTTCTTAGGTCTAACTGGTGTTGGTAAGACTGAGCTTGCTAAGGCTCTTGCCGAGCAACTTTTCGATGATGAAAATCGATTGGTGAGAAATGACATGTCTAAATACATGGAGCAACATTCAGTTTCAAGATTGATCGGTGCCCCACCAGGGCCTTATAGTGTGGTACTTTTTGATGAAGTAGAAAAGGCACATACATCGGTATTAGATGATGGGCGGTTAACGAAAGGCCAAGGCTGCACTGTGGACTTTAGAAACAATGTCATCATCATAACTTCAAAACTTGGAGCAGAACTCCTCCTAACTGGACTTTCAGGAAAATGTACGATACAAGATGTTGTTAATCGTCTTGCTGAGAGAGGAATTGTTTTGGCAGTCACAGATGCAACATTGGACTATATACTTGCTGAGAGCTATGATCCTGTTTATGTTGCTAGACCAATAAGGAGGTGGCTTGAGAGGAAGGCGGTGATAGAGTTATCTAGAATGCTGGTGAGGGAAGAAATTGATGAGAATTCAATAGTTTATATAGATGTTGGGGCTAAGGGGAGTGAATTGGTGTACCATGTAGAAAAGAATGGATGGATTGTTAATCCTGCAACCGGCCACAAGTCAGAGATATTGATTCAGATATCAAATGGAACAACAAAAACTGATGTTGCTCAAGCAATCAAGAAGATGAAGATTGAGAAAATTGATGATGATGAAGAAGAAGAAGAAATGGAAGAGTGA 2196 0.418 MNNPVLIGELGVGKTVVVDGLAQRIVISDVPRNLSEVSLIALDMGALVVGAKYMGEFEERLKAVLKEVEEAQGKIILFIDEIHLVLCAVRTEGSMDVIKLFKPMLARGQLRCIGATTMEEYTEYVEKDATFEIRFQQVYMPETSVVDTISILRALTVRYSKQSCFFLCSILTKVPSLSTKEDSQIGDLLKEDVVATSRVRSEVKKFRGKEGKKAESATDLVEQAGKLDPVIGRHDEGSWLNLERYEAHHGIRIQDRALVVAAQLSSRYITGRHLPDKAIDLVDEACANVRVQLDSEHEEIDNLERKGMQLEVELHAMEKEKDKANKARLVEVRKELDDLRYKLQPLMMKYRKEKERVDEIQRLKQKKKELIFALQEVGRRYGLVRAVDFLYDAIQGLETAIQQLEGSIEENLMLTETVGPEQIAEVVSRWIRIPVTRLGQNEKDRLIGLGDILHHRVSGQDQAVNVVAESVLRSRVGLGRPQQPTGSFLFLGLTGVGKTELAKALAEQLFDDENRLVRNDMSKYMEQHSVSRLIGAPPGPYSVVLFDEVEKAHTSVLDDGRLTKGQGCTVDFRNNVIIITSKLGAELLLTGLSGKCTIQDVVNRLAERGIVLAVTDATLDYILAESYDPVYVARPIRRWLERKAVIELSRMLVREEIDENSIVYIDVGAKGSELVYHVEKNGWIVNPATGHKSEILIQISNGTTKTDVAQAIKKMKIEKIDDDEEEEEMEE 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1455 731 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 242 430 IPR027417 -
Lal19g1455 731 SMART AAA_5 484 650 IPR003593 -
Lal19g1455 731 SMART AAA_5 1 145 IPR003593 -
Lal19g1455 731 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 433 667 IPR027417 -
Lal19g1455 731 Pfam AAA lid domain 243 330 IPR041546 -
Lal19g1455 731 SMART ClpB_D2_small_2 592 676 IPR019489 -
Lal19g1455 731 Gene3D - 437 611 IPR027417 -
Lal19g1455 731 PANTHER ATP-DEPENDENT CLP PROTEASE 243 590 - -
Lal19g1455 731 PANTHER ATP-DEPENDENT CLP PROTEASE 596 680 - -
Lal19g1455 731 PANTHER ATP-DEPENDENT CLP PROTEASE 2 162 - -
Lal19g1455 731 Coils Coil 350 380 - -
Lal19g1455 731 Gene3D - 1 144 IPR027417 -
Lal19g1455 731 Pfam ATPase family associated with various cellular activities (AAA) 5 117 IPR003959 GO:0005524|GO:0016887
Lal19g1455 731 CDD AAA 459 581 - -
Lal19g1455 731 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 160 IPR027417 -
Lal19g1455 731 PANTHER CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC 243 590 - -
Lal19g1455 731 PANTHER CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC 596 680 - -
Lal19g1455 731 PANTHER CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC 2 162 - -
Lal19g1455 731 Coils Coil 54 74 - -
Lal19g1455 731 Pfam AAA domain (Cdc48 subfamily) 484 588 IPR003959 GO:0005524|GO:0016887
Lal19g1455 731 CDD AAA 2 117 - -
Lal19g1455 731 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 488 506 IPR001270 GO:0005524
Lal19g1455 731 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 533 551 IPR001270 GO:0005524
Lal19g1455 731 Coils Coil 286 327 - -
Lal19g1455 731 Gene3D - 242 431 IPR027417 -
Lal19g1455 731 Pfam C-terminal, D2-small domain, of ClpB protein 598 664 IPR019489 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1455 Lal-Chr19 17119885 17126562 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1455 K03695 - gmx:732632 723.391
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1455 19 17119885 17126562 Lal19g1455 19 17119885 17126562 ECH