Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1452 ATGGCTTCTGTGGTTACGAACAACGGTAATGAAGTCAACGGTCAACGACGTGTTGGTTTAATCTACAATGAGAGAATGTGCGATCATTTCAGTTTACACGACAATCACCATCCCGAGGCCCCTGACCGAATCAGACTCATCTGGAACAAGCTTAACAAAACTGGTATCTGCGATCGATGTGTGATTTTGCACGCCAAAGAAGCTGAAGACAAATATATAAAGTTGGTGCATTCCAAAAGTCATGTAAATCAAATTAAGCAGATCAGCACAAAACAATACGATTCTCGAAGGCATAAGATTGCGTCAAAACTTAATTCTATATATTTTAATGAAGGTTCATCAAAAGCTGCTTATCTTGCTGCCGGCTCTGCTGTTGAGGTTGTTGAAAAAGTGGCAAGCAGACAATTGCATTCTGCTGTTGCTATTGTGAGGCCTCCAGGTCATCATGCCGAACATAATGAAGCCATGGGATTCTGTCTATTCAACAATGTTGCAATATCTGCTTCTTATCTCTTAGATGAAAGACCAGAATTAGGTATGAATAAAATTTTAATAGTTGATTGGGATGTTCATCATGGAAATGGTACTCAAAAAACGTTCTGGAATGATTCTCGTGTCTTATTCTTCTCTGTTCACAGGCATGAATTTGGAACTTTTTATCCATGTGGTGATGATGGCTTTTATACCAAGGTTGGAGAAGAAGCCGGGGCTGGATATAATATAAATGTACCCTGGGAGAATGGGAGATGTGGTGATGCTGATTACTTTGCGGTGTGGGACCACATTTTGCTTCCAGTTGCCAAAGAATTTAATCCAGACATGATTATTGTCTCTGCTGGATTTGATGCAGCTGTTGGTGACCCTCTGGGAGGATGTCGTGTCACACCATTTGGTTATTCTGTTCTGTTGGAAAAGTTGATGAATTTTGCTGAAGGTAGGATTGCACTGGTTTTAGAAGGAGGATATAATCTGGACTCCATTGCAAACTCAATGCATGCTTGTGTTGAAGTTTTGCTTGAAGGCAAGCCTGTTGCCGAATCCTCAAAGGCTTACCCATTTGAGTCCACATGGCGTGTGATTAAAGCGGTTCGTCGGGAGTTAAGTCCCTTTTGGCCTTGTCTTGCTAGTGAATTACCACAAGATTTAATTTCTCTTGTCGTACCACCTCCGCATACTCTTATTTCAAGCTCTGACTCTGAGACGGAGGAAGACACGGATCCCCTCAATTCTGAAAAAGTTGGAGATCTTCTTCAGGATGTCATAATACCTCTATCTAACCTGAAAGTTGATACAGATCAAGACATTGGTACTTCTAGTACTTGGCGATCAGAATTGTCAAATATTTACATATGGTATGCCTCTTATGGATCAAATATGTGGAAATCAAGATTCTTGTGTTACGTAGCAGGTGGACAGGTGGAAGGTATGCAAAAGCACTCTTCTGGTTCAGTGGACAAATCTCCACCAAAGGATATCCTTTGGAAAACTTTCCCTTGCCGTTTATTTTTTGGTCGCAATTCTTCCAATTCATGGGGTCTTGGAGGGGTCGCATTTCTTAATCCTGAGAGAACTTTTCAGCACAATACCTTCCTATGTCTGTACAAAATTTCGCTTGAGCAGTTCAATGATGTTTTGCTTCAGGAAAACGGTTTAAGCCTTAATGTGGGTTCTCCTTTATTTGATTTAACTGCCCTTAATGCTATCTCTGATAAGGAGTTCAATTCTTCGGAGGCTGTCAAGGGTTCTTGGTATGGTGATGTTGTATACTTAGGAAAGGAGCAGGATATCCCAATTGTTACCATGACGTGTTCATTTCTTGATATTGAACGCTTTAAATCGGGGGAGCTGCCATTAAATGCTCCTAATAAAGCCTATGCCAACACCTTAATTAAAGGGTTGGTAGAGGGAGAACAATTTTCAGAGGTGGAAGCCATTGCTTACATTGAAGAAGCTGCTGCTAAACCCTTATAA 1971 0.4094 MASVVTNNGNEVNGQRRVGLIYNERMCDHFSLHDNHHPEAPDRIRLIWNKLNKTGICDRCVILHAKEAEDKYIKLVHSKSHVNQIKQISTKQYDSRRHKIASKLNSIYFNEGSSKAAYLAAGSAVEVVEKVASRQLHSAVAIVRPPGHHAEHNEAMGFCLFNNVAISASYLLDERPELGMNKILIVDWDVHHGNGTQKTFWNDSRVLFFSVHRHEFGTFYPCGDDGFYTKVGEEAGAGYNINVPWENGRCGDADYFAVWDHILLPVAKEFNPDMIIVSAGFDAAVGDPLGGCRVTPFGYSVLLEKLMNFAEGRIALVLEGGYNLDSIANSMHACVEVLLEGKPVAESSKAYPFESTWRVIKAVRRELSPFWPCLASELPQDLISLVVPPPHTLISSSDSETEEDTDPLNSEKVGDLLQDVIIPLSNLKVDTDQDIGTSSTWRSELSNIYIWYASYGSNMWKSRFLCYVAGGQVEGMQKHSSGSVDKSPPKDILWKTFPCRLFFGRNSSNSWGLGGVAFLNPERTFQHNTFLCLYKISLEQFNDVLLQENGLSLNVGSPLFDLTALNAISDKEFNSSEAVKGSWYGDVVYLGKEQDIPIVTMTCSFLDIERFKSGELPLNAPNKAYANTLIKGLVEGEQFSEVEAIAYIEEAAAKPL 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1452 656 PANTHER BNAA09G05590D PROTEIN 11 608 - -
Lal19g1452 656 SUPERFAMILY Arginase/deacetylase 16 374 IPR023696 -
Lal19g1452 656 Gene3D Histone deacetylase domain 11 385 IPR037138 -
Lal19g1452 656 Gene3D - 441 654 - -
Lal19g1452 656 PRINTS Histone deacetylase superfamily signature 145 168 IPR000286 -
Lal19g1452 656 PRINTS Histone deacetylase superfamily signature 272 282 IPR000286 -
Lal19g1452 656 Pfam Histone deacetylase domain 37 337 IPR023801 -
Lal19g1452 656 PANTHER HISTONE DEACETYLASE 11 608 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1452 Lal-Chr19 17092841 17101314 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1452 K11406 - gmx:100788831 1065.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1452 19 17092841 17101314 Lal19g1452 19 17092841 17101314 ECH
Lal19g1452 19 17092841 17101314 Lal17g1030 17 8619275 8622225 PCT
Lal19g1452 19 17092841 17101314 Lal21g0801 21 6999578 7002736 PCT