Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1445 ATGGCAATGCAGGAAGGAAGCCCTGCCACTACTCCTAGTGCTCAACTTGTTGGCAATGCCTTTGTGGAGCAATACTACCAAATTCTACACCAATCCCCGAACTTGGTGCACAAATTTTATCAGGATTCAAGTTTCTTAAGCCGAACAGATAGCAATGGTGTGATGACGACTGTGACAACTATGAAAGCAATCAACGAAAAGATCACTTCCCTGAATTATGAAGATTATACAGCAGAAATAAAAACCGCTGATGCTCAGGATTCATATGAGAAGGGTGTGATAGTTTTAGTAACTGGATGCTTAACTGGAAAGGATAACGTGAGAAAGAAGTTCTCACAGACATTCTTTCTAGCTCCCCAAGATAAAGGCTATTATGTCTTAAATGACATCTTCAGGTACATTGAGGATAATTACATACCGCAGTTAGATTCTGCCTCAGTAAATGTCATCAACGAGAATGCTGAGGTGGTGCCCATGCCAGAAGCAGAGGATATCCATGCTCCTGAACCTCTTGTGGCAGACTGTGCAATTTCTGCAGAGGGTGAAACCCTTAATAATGGTGCTGAAGTTTATCATCCTCAGGACAATGAGGATGAAGGATCAGTTATTGATGAAAAGGGTGCCGAACCCTCTGCTGTTTTGAATCAGAATGATGCTGTTACGATTCATGATTCCACATCACCTGTACAGGATGATGCACCAAAGAAATCATATGCATCAATTGTAAAGAAAAGTAACACAGCGTCTGGTCCTGTCCATGTTCCTAGACGAACTGTTAGAGTAGCAGATGCTAAATCCAACCAACAATCGCCTGCTGCTTCCAGATCTACTCCTGAGGCAGAGGCATTAGCTCCTAGTGGTGACAGTGCTCCTGGAAGTAGCGATGTTCATGAAGAAGCTGAAGGTCACTCCATATACATACGGAATTTGCCATTTAATGCAACAGTTGAACAACTGGAGGAAGTTTTTAAAAAAAATGGTCCTATTAAGCATGGTGGAATCCAAGTTAGAAGTAGTAAGCATGGATTCTGTTTTGGCTTTGTTGAATTTGAGGAGTTGAGTTCCATGCATAGTGCACTTGAGAATGCTTATAGTCGATTGGTAGTAGTACAGAGTAGTGTTAGCTTGTACCTAATTTGTAGCATGCAGAAAGAAATTACTTTGTGTTTCGGATTTGCTTCGAAGCGTCTTCATGATATTTTCCAATCATCTGTCATTGCATCTATCATCCATATAATAGATCATTCTAAAATTGATTTCAGGCTTCACCTATTACTATTGGTGAACGACAAGCTGTTGTTGAGGAAAAGAGAACTACCACACGAGTTAGCAGTAGTGGAAGAGGGAGGTATCCTTCAGGAAGAGGTGGGTTACAAAGTGAGGGTTTCAGGGGACGTGGGAGATTTGGTGCACGCGGTTATGGCAGAAATGAATTCAGAAACCAAGGAGAGTTCTCAGAGCGACCTAAGGGTTCAACATGACAGAATGGAGGTGGCCGGGGTAGACGTCAAGGCGTTGGCAACCGTGATTCTGCACCATCAACTTCAGCATGAGTACTGTTTAGTGGAAAGGAAAAAAGGCAAAACAAAAAAGGAAACTGGTGGATTGATGATTATTTATAAAGGAAAGGGATGCAATACATTAATTTGTTTTCCACTTGTTTAG 1665 0.4174 MAMQEGSPATTPSAQLVGNAFVEQYYQILHQSPNLVHKFYQDSSFLSRTDSNGVMTTVTTMKAINEKITSLNYEDYTAEIKTADAQDSYEKGVIVLVTGCLTGKDNVRKKFSQTFFLAPQDKGYYVLNDIFRYIEDNYIPQLDSASVNVINENAEVVPMPEAEDIHAPEPLVADCAISAEGETLNNGAEVYHPQDNEDEGSVIDEKGAEPSAVLNQNDAVTIHDSTSPVQDDAPKKSYASIVKKSNTASGPVHVPRRTVRVADAKSNQQSPAASRSTPEAEALAPSGDSAPGSSDVHEEAEGHSIYIRNLPFNATVEQLEEVFKKNGPIKHGGIQVRSSKHGFCFGFVEFEELSSMHSALENAYSRLVVVQSSVSLYLICSMQKEITLCFGFASKRLHDIFQSSVIASIIHIIDHSKIDFRLHLLLLVNDKLLLRKRELPHELAVVEEGGILQEEVGYKVRVSGDVGDLVHAVMAEMNSETKESSQSDLRVQHDRMEVAGVDVKALATVILHHQLQHEYCLVERKKGKTKKETGGLMIIYKGKGCNTLICFPLV 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1445 554 Gene3D - 7 138 - -
Lal19g1445 554 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 305 364 IPR000504 GO:0003723
Lal19g1445 554 SUPERFAMILY RNA-binding domain, RBD 297 362 IPR035979 GO:0003676
Lal19g1445 554 MobiDBLite consensus disorder prediction 262 276 - -
Lal19g1445 554 SMART rrm1_1 304 371 IPR000504 GO:0003723
Lal19g1445 554 Pfam Nuclear transport factor 2 (NTF2) domain 17 133 IPR002075 -
Lal19g1445 554 SUPERFAMILY NTF2-like 13 134 IPR032710 -
Lal19g1445 554 Gene3D - 230 375 IPR012677 -
Lal19g1445 554 ProSiteProfiles Nuclear transport factor 2 domain profile. 17 133 IPR018222 -
Lal19g1445 554 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 1 363 IPR039539 -
Lal19g1445 554 CDD RRM_SF 305 362 - -
Lal19g1445 554 PANTHER RAS GTPASE-ACTIVATING BINDING-LIKE PROTEIN 1 363 - -
Lal19g1445 554 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 303 375 IPR000504 GO:0003723
Lal19g1445 554 CDD NTF2 13 135 IPR018222 -
Lal19g1445 554 MobiDBLite consensus disorder prediction 261 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1445 Lal-Chr19 17071522 17076032 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1445 K24983 - gmx:100801253 558.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1445 19 17071522 17076032 Lal19g1445 19 17071522 17076032 ECH