Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1428 ATGAAGCTACTTAGTGCGAAATTGAGTGAAATATTCTTACACAGACACGCTTCCATTAACCGCTTCCGATCATCACTATCTCAAACTTGTACTACTCCTCCTTCCCTTCAATTTCAATTTCAACTCCATTTTCATCGAAACCTATCATCTTCCTCCGATGAACATTTTCCGAGTGGTGAATTTGAATTTAAGCCTATTACTGGTTGGAATAAATTTATTGTGAAACTTAAGATGTTCATTGCTTTCCCTCGTATTCGCCATGCTACTGTTTATACCTTCAAATTGCGCGGCCAGATATCCGATCAATTGAACACTAGGTTCAGTAGAGGATTATCTCTACCTCAGATATGTGATAATTTCATCAAAGCTGCTTATGATCCCCGTATTTCTGCTATTTATCTTCATATTGATTCCTTAAGTTGCGGCTGGGCTAAACTCGATGAAATTCGAAGGCACATCCTCGATTTCAAAAAATCAGGAAAAATCGTTGTGGCTTATGTCCCTTCATGTCGAGAAAAAGAATATTACCTTGCATGTGCATGTGACGAGATATATGCCCCTCCAAGTGCTTATTTTTCTTTATTTGGGTTGACTGTTCAAGCCTCGTTCGTAAGAGGTATTTTAGATAATATAGGAATTGAACCACAAGTGGAAAGGGTTGGCAAATACAAAAGTGCAGGAGATCAACTAACCCGTAGAACCATGTCTGATGAAAATTGTGATATGTTGACTGCATTGCTAGAAAATATCTATACAAATTGGCTGGATAAAGTCTCTTCTGCTAAAGGAAAGAAAAGAGAAGATATTGAGAACTTCATAAATGAAGGTGTTTATCAGGTAGACAGGCTTAAAGAAGAAGGCTTCATATCAGACATAATTTATGATGACGAGGTTATCACCAGATTGAAGGAGAGACTTGGAGTGAAAGCAAATAAAAATCTGCCTATGGTTGATTACAGAAAATACTCTAGAGTTAGAAAATGGACTCTCGGAATATCAGGTGGTAAAGAACTGATAGCCATCATCCGAGCCTCAGGGATCATTCGTCGTGTCGAGAGTCCATTAAGTGCTTCTAGCTCTGGTATCATTGGAGAGAAGTTCATTGAGAAGATTCGCAGGATTAGAGAGTCAAAAAAAATTAAGGCTGCAATTATCCGAATTGACAGTCCTGGAGGTGATGCTCTTGCTTCTGATTTAATGTGGAGAGAAATCAGGCTTCTGGCTGCCTCAAAACCAGTTGTTGCTTCAATGTCTGATGTTGCAGCAAGTGGAGGATACTACATGGCAATGGGAACAGGAACAATTGTAGCAGAAAGTCTTACCTTAACTGGTTCAATTGGAGTGGTCACAGGAAAATTTAACCTGGGAAAACTTTATGAGAAGATTGGCTTCAAAAAAGAAATCATATCAAGGGGCAGATATGCTGAGCTCCTTGCAGCTGAGCAGCGTTCTTTTAGGCCAGATGAAGCAGAATTATTTGCCAAGTCTGCACAGCATGCTTATAAACAATTTCGAGATAAGGCCGCCTTTTCTAGATCAATGACTGTAGACAAGATGGAAGAAGTTGCACAGGGAAGGGTGTGGACTGGTAAGGATGCAGCTTCACACGGTTTGGTTGATGCCATCGGAGGGCTCTCTCGAGCTATCGCCATTGCAAAGTTGAAGGCCAATATACCTAAAGATAAAGAGGTTACTATTGTGGAGCTCTCAAGACCCAACCTTTCTATACCGGAGTTTATAAGTGGTGTAGGTAATTCTCTTGTTGGAGTAGACAGAACAATAAAGGAACTGTTAGAGGAATTCACATTATCTGATGGAGTTCAAGCACGGATGGATGGAATCTTGTTTCAGAAATTAGAAGGACACCCAGGCTGCAACCCTATTTTGGCATTGGTAAAAGATTACCTCACTTCCATTTAG 1920 0.4005 MKLLSAKLSEIFLHRHASINRFRSSLSQTCTTPPSLQFQFQLHFHRNLSSSSDEHFPSGEFEFKPITGWNKFIVKLKMFIAFPRIRHATVYTFKLRGQISDQLNTRFSRGLSLPQICDNFIKAAYDPRISAIYLHIDSLSCGWAKLDEIRRHILDFKKSGKIVVAYVPSCREKEYYLACACDEIYAPPSAYFSLFGLTVQASFVRGILDNIGIEPQVERVGKYKSAGDQLTRRTMSDENCDMLTALLENIYTNWLDKVSSAKGKKREDIENFINEGVYQVDRLKEEGFISDIIYDDEVITRLKERLGVKANKNLPMVDYRKYSRVRKWTLGISGGKELIAIIRASGIIRRVESPLSASSSGIIGEKFIEKIRRIRESKKIKAAIIRIDSPGGDALASDLMWREIRLLAASKPVVASMSDVAASGGYYMAMGTGTIVAESLTLTGSIGVVTGKFNLGKLYEKIGFKKEIISRGRYAELLAAEQRSFRPDEAELFAKSAQHAYKQFRDKAAFSRSMTVDKMEEVAQGRVWTGKDAASHGLVDAIGGLSRAIAIAKLKANIPKDKEVTIVELSRPNLSIPEFISGVGNSLVGVDRTIKELLEEFTLSDGVQARMDGILFQKLEGHPGCNPILALVKDYLTSI 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1428 639 PIRSF Protease_4_SppA 35 638 IPR004634 GO:0006465|GO:0008233|GO:0016021
Lal19g1428 639 SUPERFAMILY ClpP/crotonase 339 544 IPR029045 -
Lal19g1428 639 TIGRFAM SppA_dom: signal peptide peptidase SppA, 36K type 339 552 IPR004635 GO:0006508|GO:0008233
Lal19g1428 639 Gene3D - 89 231 - -
Lal19g1428 639 Gene3D - 232 324 - -
Lal19g1428 639 CDD S49_Sppa_N_C 339 553 IPR002142 GO:0006508|GO:0008233
Lal19g1428 639 CDD S49_SppA_67K_type 92 304 - -
Lal19g1428 639 Gene3D - 483 607 - -
Lal19g1428 639 Gene3D - 335 482 - -
Lal19g1428 639 SUPERFAMILY ClpP/crotonase 76 294 IPR029045 -
Lal19g1428 639 PANTHER PROTEASE 4 58 638 - -
Lal19g1428 639 Pfam Peptidase family S49 407 557 IPR002142 GO:0006508|GO:0008233
Lal19g1428 639 Pfam Peptidase family S49 156 308 IPR002142 GO:0006508|GO:0008233
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1428 Lal-Chr19 16952873 16962193 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1428 K04773 - gmx:100809623 933.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1428 19 16952873 16962193 Lal19g1428 19 16952873 16962193 ECH