Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1423 ATGCCTACCATCAGCGTGGGTCGGGATCGTCTGTATGCGGCTCTAGGAAAATCTTACTCGCAAGAGGAATTCGAAGACTTATGCTTCAGTTTTGGGATCGAACTTGATGACGTCACTACAGAAAAAGCAATTGTGAGAAAAGAGAAGCATTTAGAAGACGAAGTTGGTGACGATGATGAAGAAGTCATTTACAAAATTGAAGTTCCCGCTAATAGGTATGATCTGCTCTGTCTCGAAGGTCTTGCTCAAGCACTTCGTGTTTTCTGTGGGTTCCAGGAGATACCTACATATACATTGGCTGATGTTACTAAAGATGCAATCCTCAAAATGCATGTGAAGAAGGAGACATCTCAAATTCGACCATATGTTGTCTGTGCTGTACTGAGAGGTATAACTTTTGATAAAGCAAGATACAACAGTTTTATTGACCTCCAAGACAAGCTTCATCAAAACATTTGCCGGAGAAGAACTCTTGTCGCCATTGGCACTCATGATCTGGATAAATTGGAAGGCCCTTTCACCTATGAGGCACTGCCACCTTCAAGTATAAGTTTCATTCCACTAAAGCAGGAAAGATGCTTCAGGGCCGATGAGCTGATGGAGTTCTACAAATCAGATTTGAAACTGAAGAAATTCTTGCATATCATTGAGGGCTCCCCTGTTTTTCCTGTTCTATATGACCATAAGAGAACTGTTTTATCTCTTCCGCCTATTATCAATGGTGCACACTCAGCTATCACTCTGGAGACAAAAAATGTATTTATTGAATGTACTGCAACTGATCTGACAAAGGCAAAGATTGTTTTGAATACAATGGTAACAACCTTCTCAGAATATTGTGAAAATAAGTTTGTCGTTGAGCCAGTTGAAGTGATTTATTCTGATGGAGAGTCACACATATATCCTGATTTGTCTGTCTACAATATGGAAGTTTCACTGCCCTACCTTTCAGGATTGATTGGGGTGTCGTTGAAGGCAGAAGAGGTCACTAAGCTCTTAAATAAGATGCAATTGCATGCCAATCAGTCTGCATCTGACAGTAAGCAGTGTAGCTTTGTTGTATCTGTACCTCCTAGTAGAAGTGATATTCTTCACCCATGTGATGTTATGGAGGACGTTGCAATTGCTTATGGATTCAATGCTATTAAGGATAAAGCAGTAATAGATAATAAGGGCTCAAAGAGATTGGCCTCTTCCTTGACACTTCTTTCTCTGAATGAGTTCAGCGATCTTATCAGAAAAGAGGTTGCATTGGTTGGGTTCACGGAGGTCTTGACATTTATACTTTGCTCCAAAAAGGAAAACTTTGCCTTGCTAAACCGCAAAGATGATAAATCGAAAGCAATTATCATCGGAAACCCTAGGTCTTCAGACTTTGAGGCTGTTCGAACTAGTCTTATGCCTGGCATTTTGAAAACTGTTGCTCACAACAAGGATCATCCAAAGCCTATAAAGATTTTTGAAGTGGGTGATATTGCAATTTTGGATGACCAAAAAGATGTTGGCGCAAAAAATTGTCGCCATTTGGCTGCACTGTACTGTGGCGCTAATGCAGGATTTGAGATAATTCATGGTTTGGTGGACAGAGTAATGGAAAAGAATGGGGTTTCCTTTGTTTCACCTGGTGATATATCAGGTTATTATATTGAGCAGTCAGATGAGCCTGAGTTTCTTGCTGGTAGACAAGCTAGAATCATTTACAAGGGAAACCAAATTGGCACTTTTGGCATTGTTCACCCAGAGGTATTAAACAACTTCGATATTCCTGATCCATGCTCTCTTGTTGAACTTAACATTGAAAGTTTCTTGTAG 1812 0.4018 MPTISVGRDRLYAALGKSYSQEEFEDLCFSFGIELDDVTTEKAIVRKEKHLEDEVGDDDEEVIYKIEVPANRYDLLCLEGLAQALRVFCGFQEIPTYTLADVTKDAILKMHVKKETSQIRPYVVCAVLRGITFDKARYNSFIDLQDKLHQNICRRRTLVAIGTHDLDKLEGPFTYEALPPSSISFIPLKQERCFRADELMEFYKSDLKLKKFLHIIEGSPVFPVLYDHKRTVLSLPPIINGAHSAITLETKNVFIECTATDLTKAKIVLNTMVTTFSEYCENKFVVEPVEVIYSDGESHIYPDLSVYNMEVSLPYLSGLIGVSLKAEEVTKLLNKMQLHANQSASDSKQCSFVVSVPPSRSDILHPCDVMEDVAIAYGFNAIKDKAVIDNKGSKRLASSLTLLSLNEFSDLIRKEVALVGFTEVLTFILCSKKENFALLNRKDDKSKAIIIGNPRSSDFEAVRTSLMPGILKTVAHNKDHPKPIKIFEVGDIAILDDQKDVGAKNCRHLAALYCGANAGFEIIHGLVDRVMEKNGVSFVSPGDISGYYIEQSDEPEFLAGRQARIIYKGNQIGTFGIVHPEVLNNFDIPDPCSLVELNIESFL 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1423 603 SUPERFAMILY Putative DNA-binding domain 308 383 IPR009061 -
Lal19g1423 603 SMART B3_4_2 119 281 IPR005146 GO:0003723|GO:0004826
Lal19g1423 603 PANTHER PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 1 603 IPR045060 GO:0004826|GO:0006432
Lal19g1423 603 PANTHER PHENYLALANINE--TRNA LIGASE BETA SUBUNIT 1 603 - -
Lal19g1423 603 TIGRFAM pheT_arch: phenylalanine--tRNA ligase, beta subunit 1 603 IPR004531 GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432
Lal19g1423 603 SUPERFAMILY Class II aaRS and biotin synthetases 376 602 IPR045864 -
Lal19g1423 603 Pfam B3/4 domain 120 281 IPR005146 GO:0003723|GO:0004826
Lal19g1423 603 SUPERFAMILY PheT/TilS domain 220 281 - -
Lal19g1423 603 SUPERFAMILY Putative DNA-binding domain 4 95 IPR009061 -
Lal19g1423 603 Gene3D Bira Bifunctional Protein; Domain 2 403 603 IPR045864 -
Lal19g1423 603 SMART B5_2 306 379 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Lal19g1423 603 ProSiteProfiles B5 domain profile. 304 384 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Lal19g1423 603 Gene3D - 1 89 - -
Lal19g1423 603 CDD PheRS_beta_core 406 602 IPR041616 -
Lal19g1423 603 Pfam Phe-tRNA synthetase beta subunit B1 domain 1 89 IPR040659 -
Lal19g1423 603 Gene3D - 101 305 IPR020825 -
Lal19g1423 603 Pfam tRNA synthetase B5 domain 309 379 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Lal19g1423 603 Gene3D - 307 382 - -
Lal19g1423 603 Pfam Phenylalanyl tRNA synthetase beta chain CLM domain 406 599 IPR041616 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1423 K01890 - gmx:100812830 1084.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1423 19 16926344 16933988 Lal19g1423 19 16926344 16933988 ECH