Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1094 ATGGAGAAGATTCGGAAAAGGAAGAAGGTGGAGCGTGAACAACACTCAAAGTCGAAATCGGTTCGTGGTGGTTCTCCAAAACCAGATAACGACAAAGACCAATACCCGTTTCACACTCGACCCGATCCACAAGAATGTCAAGCCATACGAGACATTCTATTATCACTCCACACCATTCCTCCAGAACTTGCCAAGTACCGCCAACTAAAATCACCAAACGACACCGTTCAACATGAGACCGTTCTTGACGGTTTGGTCCGAACCGTCCTCTCTCAGAACACCACTGAAACTAATTCCCAACGCGCTTTTCATTCTCTCAAAGCTTCCTTTCCTACTTGGGAACATGTGCTTAGTGCTGAATCGAAGGATTTGGAAAATGCGATTCGATGCGGTGGTTTAGCTCCAACTAAGGCTTCTTGTATTAAGAATTTGTTGCGCCTTTTGGTAGAGAAAAGAGGGAAGTTGTGCTTAGAGTATCTGCGGGACATGTCTATTGATGAAATTAAGGCTGAACTCTCCCTTTTCAAAGGAATTGGTCCTAAAACAGTGGCTTGTGTGTTGATGTTCAATCTTCAGCTAGATGATTTTCCTGTGGATACTCACATATTTGAGATTGCAAAAACAATTGGTTGGGTACCAGCAGTTGCAGACAGAAATAAGACATATCTTCATCTAAACCGAAGGATCCCCAATGAACTGAAGTTTGAGCTGAATTGTCTTTTGTTTTATCACGCGTATGACAATTACATGACGTATGCATTTCCGCATGATGAGTTAAAGCCTCTCTCTAAAACATTCACCAACTCCCTGGGCGAGCTGGGAAATTTGAAGCTTGAGCACTTGCCACAAGATTACAACGGCTCTGCCCTTACGCTTATTGAATCATTATCTAGCCTTCTTATTATGGGCAACAATACTGAATTCGAGAGGGCAGTGCTCTGGCTTTCTGAGAATCTAACATTTGACGTTGATGCACGCGTAAATCTTTTTGAGTGCAACATAAGAGTTCTTGGAGGACTTGTCTCTACTCATTTACTTGCGTCTGATTCTTCAAAGAGGTTGTTTCAAGGGGCTTACAAGAATCAGCTGCTAGTTCTAGCTGAAGATTTAGGAAAACGCTTTCTACCAGCGTTCAACACACCCACTGGATTGCCATATGCATGGATTAACTTGAAGTACGGAGTAATGGAGAATGAGACTACAGAAACAAGCACTTCAGGGTGTGGTTCTCTGATTCTTGAAATGGGTGCTTTATCAAAAATGACAGGTGACCCCAGATATGAATTAGCAGCTTTACGAGCTCTTCGTAAGCTATGGAGCATGAGGAGCTCGTTGAATTTATTTGGAACCACACTGGATGTGGCAACTGGGGAATGGATTGAGTTTTCATCAGGAATTGGAGCCGGGGTTGATTCCTTCTACGAGTATCTACTTAAAGGCCATATCCTTTTTGGGAATGAAGACTTGTGGGGAATGTTTCATTCTGCTTATCTTGCTGTGCAGAAATATTTCAGATATGGACCTTGGTATCATGAAGCTGATATGAGGACAGGAAGAGCAACTTATTGGCAGCTTACAAGCCTTCAAGCATTTTGGCCTGGCCTACAGGCAATAAACTGGACATAG 1626 0.4293 MEKIRKRKKVEREQHSKSKSVRGGSPKPDNDKDQYPFHTRPDPQECQAIRDILLSLHTIPPELAKYRQLKSPNDTVQHETVLDGLVRTVLSQNTTETNSQRAFHSLKASFPTWEHVLSAESKDLENAIRCGGLAPTKASCIKNLLRLLVEKRGKLCLEYLRDMSIDEIKAELSLFKGIGPKTVACVLMFNLQLDDFPVDTHIFEIAKTIGWVPAVADRNKTYLHLNRRIPNELKFELNCLLFYHAYDNYMTYAFPHDELKPLSKTFTNSLGELGNLKLEHLPQDYNGSALTLIESLSSLLIMGNNTEFERAVLWLSENLTFDVDARVNLFECNIRVLGGLVSTHLLASDSSKRLFQGAYKNQLLVLAEDLGKRFLPAFNTPTGLPYAWINLKYGVMENETTETSTSGCGSLILEMGALSKMTGDPRYELAALRALRKLWSMRSSLNLFGTTLDVATGEWIEFSSGIGAGVDSFYEYLLKGHILFGNEDLWGMFHSAYLAVQKYFRYGPWYHEADMRTGRATYWQLTSLQAFWPGLQAINWT 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1094 541 Pfam Glycosyl hydrolase family 47 242 539 IPR001382 GO:0004571|GO:0005509|GO:0016020
Lal19g1094 541 Gene3D - 198 243 IPR023170 -
Lal19g1094 541 PANTHER ALPHA-MANNOSIDASE I MNS5 240 537 - -
Lal19g1094 541 MobiDBLite consensus disorder prediction 1 42 - -
Lal19g1094 541 PANTHER ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2 240 537 IPR044674 GO:0004571|GO:1904380|GO:1904382
Lal19g1094 541 SMART endo3end 90 247 IPR003265 GO:0006284
Lal19g1094 541 Gene3D Hypothetical protein; domain 2 75 197 - -
Lal19g1094 541 PRINTS Glycosyl hydrolase family 47 signature 241 261 IPR001382 GO:0004571|GO:0005509|GO:0016020
Lal19g1094 541 PRINTS Glycosyl hydrolase family 47 signature 326 344 IPR001382 GO:0004571|GO:0005509|GO:0016020
Lal19g1094 541 PRINTS Glycosyl hydrolase family 47 signature 376 395 IPR001382 GO:0004571|GO:0005509|GO:0016020
Lal19g1094 541 PRINTS Glycosyl hydrolase family 47 signature 467 484 IPR001382 GO:0004571|GO:0005509|GO:0016020
Lal19g1094 541 PRINTS Glycosyl hydrolase family 47 signature 524 540 IPR001382 GO:0004571|GO:0005509|GO:0016020
Lal19g1094 541 Gene3D - 244 541 IPR012341 GO:0005975
Lal19g1094 541 SUPERFAMILY DNA-glycosylase 60 245 IPR011257 GO:0003824|GO:0006281
Lal19g1094 541 Pfam HhH-GPD superfamily base excision DNA repair protein 86 229 IPR003265 GO:0006284
Lal19g1094 541 SUPERFAMILY Seven-hairpin glycosidases 241 538 IPR036026 GO:0004571|GO:0005509|GO:0016020
Lal19g1094 541 CDD ENDO3c 85 244 IPR003265 GO:0006284
Lal19g1094 541 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1094 Lal-Chr19 14592305 14602740 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1094 241 538 Glycoside Hydrolase AT1G27520 82.550 0.0 524
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1094 K10084 - gmx:100793674 556.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1094 19 14592305 14602740 Lal19g1094 19 14592305 14602740 ECH