Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1084 ATGGAGTCACGCAATGACGAAAAAGCCCTTCCCACAGTTCGTGTCTCCAACATTCCTCAATCCGCCACCGCCAAAGAACTCCTCCAATTTCTCGAATCTATCTTCGGTCCTTCCTCTGTCTTCGCCCTCGAAATACGTTCCCACCATGAAAACTGGAACTCTCGCGGTTCAGGCCGAGTTCAATTCGAAACCCTAGAATCTAAATCCAAAGCCATTACTCTCTCCCTCCAAAACGACCTCGTTTTCATGTCCCATTATCTTCAGGTAACTGAATCCTACGGTGATATCATCCCTCGCCCTTGCATTCCCCGTAACAGGGTCTGTAACTCCGATTTCTACGCGGGTTTCATGGTCCGTGATCATCGCATGAGTGTTCTGGAATCGTGGGAAAGGGTTAAAGGTTGGGTTATGCCTGAAAGAAAAAGGGTTGACTTTTTGGTCTCACATGGTGGAAATTTTTACAAGCTTGAAATCATGTTTGATCACATTTTAGAGGCTCATGGTTATTCTTTGGGAGGAGATTCCAAAATCAATGCTATTGTCTTCAAGCTGAAATATGGGCCAAAGATCTATCAGAAAACAGCTGGGCCAAATATAGCAGCGAAGTTTAAAGCTGATAGGTACCACTTCTGCAAGGAGGATTTTGAATTTCTTTGGGTGCGAACAACTGACTTCTCAGCTACTAAGTCAATTGGTCACTCTACATCATTTTGTTGGGAAATTGAGGAAGAGTCATTTGCTTCAGATATTTTTAAAAGCTTCCCACATTACAGAGAAAATTTGGAAGGTCTAATTCTGGAAGACGGGGAAGAATTCTGTACTTCAACTGAAACTGTTTCATTTGCTTCAGATATTTTTAAAAGCTTCCCACGCTACAGAGAAAATTTGGAAGGTCTAATTCTGGAAGATGGGAAAGAATTCTGTACTTCAACTGAAACTGTTCCACTAGTAAAGTGTGGTTCAGATTCTAAATTACCATATGAGATTCTTTTCCAACTCAATTCCCTTGTTCATACCCAGAAACTTAGCCTTGCTTCAGTTGATGATGATTTGATTGACTTGTTAGGAAGCTTAGATGAAGAAACTAAAGCCATTGTTTTACAGAAATTGCACAAGCTGGATTCTACTTGTTATGAGCCCCTAAAATTTGTGAGGACTCAATTACATGTGCTAAGCAGCAGGGGTAGACGTCCTCCGCCTTCATCACAGAAAAGGTTGACAGATAATAACATAATGAGTTGTCATAGAGCGTTGATTACACCATCAAAGATTTATTGCCTTGGTCCTGAGCTTGAAACCTCAAATCATGTGGTAAAGCATTTTGCAGCATATGCTTCAGACTTCATGAGGGTTACTTTTGTTGAAGAGGATTGGACTAAGCTTCAACCTGATGCAGTATCATGCCGTGCGCAAAAGGGAATATCAGTATCAAGTCGTGTGCAAAAGGGAATATCTGTTTCAAGGTGTGTGCAAAAGGGAATATCAGTATCAAATTGTGTGCAAAATGGAATATTTCCAAAACCTTTTAGGACTGAAATATATAAGCGGATATTGACTATTCTCCGAGATGGGATTGTAATTGGTTCAAAAAAGTTTGAGTTTCTGGCCTTCTCTGCTAGTCAATTGCGATCAAGTTCTGTTTGGTTGTTTGCTTCTAACGACAATGTGAAAGCAGAAGATATCAGGGAATGGATGGGATGCTTCAACAATATCCGCAGTGTTTCTAAATGTGCAGCCAGAATGGGTCAGCTGTTCAGTTCGTCCGTGCAAACTCTTGAAGTGCCTGCTCAAGATGTGGAGATTATTCCAGACATTGAAGTTACCACAGACGGTGTAAACTACTGTTTCTCAGATGGTATTGGAAAAATTTCTCAATCTTTTGCAAGGCAAGTTGCTCAAAAGCTTAAATTGGATCAGAGTCGGATTCCATCAGCATTTCAAATTCGGTATGGTGGATACAAAGGTGTCATTGCCGTTGATCGCCATTCCTATAGGAAGTTATCATTGCGTAGCAGTATGCTTAAATTTGAATCCAAAAACAGGATGCTTTGTGTCACTAAATGGAGTGAGTCAATGCCTTGCTTTCTCAATCGAGAGATTATATCCCTTTTGTCTACCTTAGGGGTAAAAGATGAGGTGTTTTTGGCAATGCAACAGGAACAATTGAATTTGCTGGGTAGGATGATGACTGACAGTCAGGCGGCTTTGGATGTTTTGGAAAGATTAAGTGGTGCTGATTCAAGAAGCATTCTAGTAAAGATGTTGCATGCATATTATGAGCCGAACAGTGAGCCTTACCTATCGATGATGCTTATGGCTCATTATGCATACCAGTTATCTGATTTGAAAAGTAAATGCCGAATTGTTGTTCCCAAGGGTAGGATCTTAGTAGGTTGCTTGGATGAAACTGGTATTTTGAATTATGGCCAAGTATTTGTTCGCATCACTGTAAAAAAAACTAAGGAACAATTTGAAGATGAAAGCTTAAGGAAAGTGGATGGTGATGATTGCACCAGTATAATAGTTGGGAAGGTGGTGGTCACAAAAAATCCTTGTCTTCACCCAGGAGACGTCAGAGTCCTTGATGCTATCTACAGTGAAGAATTAGAGGAGAAGGGTTTGAGGGATTGCCTTGTCTTTCCAAAAAAAGGACACAGGCCTCATCCGAATGAATGCTCTGGGGGTGATCTCGATGGAGATTTATTTTTCATAAGCTGGGACAAAGAACTGATTCCATGTGAAATTGAGGCTCCAATGGACTACACAGGAAGGAGGCCTCGTGTAATGGATCATAAGGTGACAATAGAGGAAATCCATCAATTTTTTGTTGATTACATGATCAATGATACTTTGGGTGCTATCTCTACCGCACACCTTGTTCATGCTGACCGAGAACCAGACAAGGCGAGGAGTAGAAAATGTCTAGAGTTGGCGAACCTTCATTCCATGGCTGTTGACTTTGCAAAGACTGGAGCACCTGCTGAAATGCCTAGAGTTTTGAAACCAAAAGAGTTTCCAGATTTCATGGAGAGGGAGGACAAGCCTAAGTATATCTCCAATGGGGTACTAGGGAAACTTTATCGTGCCATAATCGATTCAAATTTGCAAGCAAGGTCGAACTTTGTCTGGTCAGAGAAGATTGCGGAAGAAGCATATGATCAAGATCTTGAAGTTCGGGGTTTTGAGGTCTTCCTTGAGACAGCATTAAGTCACAAAGAAATGTATGCACAAAAGATGAGCAGTTTAATGAACTTCTATTGTGCAGAGACTGAAGATGAAATGCTGACTGGTAACTTGCAAAACCGCGCTTCATATTTGCAGCGTGATAACCGCAGATATGGAGATATGAAGGATCGGATTTTAATCGCAGTCAAGAATCTTCAGCATGAAGCTAAAGAATGGTTTGAAACTAGTTGCCAACAACCTGAATATCAACAACATTTGGCATCTGCATGGTATCATGTGACCTATCACCCAAGATATTTCCAGGAAAGCTCCAGCTTTTTGAGCTTTCCATGGATAGTTGGTGACATTTTATTGCAAATAAAGTCTGCTAACCAAAAAGCTCAATGTGACAGCTTGCTCTAA 3588 0.4097 MESRNDEKALPTVRVSNIPQSATAKELLQFLESIFGPSSVFALEIRSHHENWNSRGSGRVQFETLESKSKAITLSLQNDLVFMSHYLQVTESYGDIIPRPCIPRNRVCNSDFYAGFMVRDHRMSVLESWERVKGWVMPERKRVDFLVSHGGNFYKLEIMFDHILEAHGYSLGGDSKINAIVFKLKYGPKIYQKTAGPNIAAKFKADRYHFCKEDFEFLWVRTTDFSATKSIGHSTSFCWEIEEESFASDIFKSFPHYRENLEGLILEDGEEFCTSTETVSFASDIFKSFPRYRENLEGLILEDGKEFCTSTETVPLVKCGSDSKLPYEILFQLNSLVHTQKLSLASVDDDLIDLLGSLDEETKAIVLQKLHKLDSTCYEPLKFVRTQLHVLSSRGRRPPPSSQKRLTDNNIMSCHRALITPSKIYCLGPELETSNHVVKHFAAYASDFMRVTFVEEDWTKLQPDAVSCRAQKGISVSSRVQKGISVSRCVQKGISVSNCVQNGIFPKPFRTEIYKRILTILRDGIVIGSKKFEFLAFSASQLRSSSVWLFASNDNVKAEDIREWMGCFNNIRSVSKCAARMGQLFSSSVQTLEVPAQDVEIIPDIEVTTDGVNYCFSDGIGKISQSFARQVAQKLKLDQSRIPSAFQIRYGGYKGVIAVDRHSYRKLSLRSSMLKFESKNRMLCVTKWSESMPCFLNREIISLLSTLGVKDEVFLAMQQEQLNLLGRMMTDSQAALDVLERLSGADSRSILVKMLHAYYEPNSEPYLSMMLMAHYAYQLSDLKSKCRIVVPKGRILVGCLDETGILNYGQVFVRITVKKTKEQFEDESLRKVDGDDCTSIIVGKVVVTKNPCLHPGDVRVLDAIYSEELEEKGLRDCLVFPKKGHRPHPNECSGGDLDGDLFFISWDKELIPCEIEAPMDYTGRRPRVMDHKVTIEEIHQFFVDYMINDTLGAISTAHLVHADREPDKARSRKCLELANLHSMAVDFAKTGAPAEMPRVLKPKEFPDFMEREDKPKYISNGVLGKLYRAIIDSNLQARSNFVWSEKIAEEAYDQDLEVRGFEVFLETALSHKEMYAQKMSSLMNFYCAETEDEMLTGNLQNRASYLQRDNRRYGDMKDRILIAVKNLQHEAKEWFETSCQQPEYQQHLASAWYHVTYHPRYFQESSSFLSFPWIVGDILLQIKSANQKAQCDSLL 1195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1084 1195 Gene3D - 1 95 IPR012677 -
Lal19g1084 1195 CDD RRM_SF 13 89 - -
Lal19g1084 1195 PANTHER RNA-DEPENDENT RNA POLYMERASE 8 280 IPR007855 GO:0003968
Lal19g1084 1195 PANTHER RNA-DEPENDENT RNA POLYMERASE 282 477 IPR007855 GO:0003968
Lal19g1084 1195 PANTHER RNA-DEPENDENT RNA POLYMERASE 495 1189 IPR007855 GO:0003968
Lal19g1084 1195 PANTHER RNA-DEPENDENT RNA POLYMERASE 2 495 1189 - -
Lal19g1084 1195 PANTHER RNA-DEPENDENT RNA POLYMERASE 2 282 477 - -
Lal19g1084 1195 PANTHER RNA-DEPENDENT RNA POLYMERASE 2 8 280 - -
Lal19g1084 1195 SUPERFAMILY RNA-binding domain, RBD 9 95 IPR035979 GO:0003676
Lal19g1084 1195 Pfam RNA dependent RNA polymerase 419 1030 IPR007855 GO:0003968
Lal19g1084 1195 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 94 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1084 Lal-Chr19 14533985 14539488 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1084 K11699 - gmx:100808274 1736.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1084 19 14533985 14539488 Lal19g1084 19 14533985 14539488 ECH