Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1081 ATGAACCGACACAATAACCGTTCCGTTAACCGATCGTTTAAGAAGTCCGTTAACTATCACGCCGATCATGACGCTGCTTCTTCTTCTGAGAGCTGCGCTTCTAGCGGAGGTGGTGAAATTAACAGCACTGTGCTGCCGCGGCGCACGGTGTTCGGCGAAAGATTCGCCAAACTGGAGGAAGGTGAAAAGGTTCGGAATATTATGGAGAGCAAATTCGTTCGGTGGTTGGAATCGCACGAGTTGGAACATGAGGTAGTTGTGGTTCATAGGAACGTTTGTTCGAACGTGATGTTGCAGGCGAAGGTTCATTGCTTTCATATTTTCATGCGCGCAGTGGCGAAATTGCGCGAGGGAGATCCTAACGTTAAGTATGCTTGGTATGGAGCTTCGAGTAAGGGAGAGATCGATGATATCGTTGAACACGGTTTCGGTGGGAAGAATCTGAATAATGGACTGCGTCTTTCTCCAGAGGATTCTCCTCTCGAAAGTGTGAAAAGGAGTGTTGCTGACAAACACGGTCTGAGGCACATGTTGTTGTGTCGTGTTATACTAGGGAGGACAGAGCTGGTGCAATCTGGGTCTGATCAATGGCGTCCGAGTTCTGAAGAGTTTGATTCCGGTGTGGTGGAGAGTGTTTCAGCTCCAAAGGAGTATGTTGTTTGGTGCAGCAAGATCAACACTCATGTTTTGCCTGAGTTTGTTTTAAGTTTCAACCTTCCTTCATCTTCATCCGCAGGGCGTGTGAAGATTGAACAACCATTGAGACCAACTTCGCCTTGGATGCCATTCCCAGCTCTAATTGCTTTGCTTTCTAGGACTTTGCCTTCGCCTGATATTACCATGATAAACAAGTACCACAAAGATTATGCCGAAAAGAAGATTTCACGACAGGAGCTGATACAAAAAGTGAGAGTAATAGCGGGGGACACATTGCTGGCTTCGATCATCAGAACTTTCAGAGCCAGGAAAATACCTGCAAGCTGCTTGAAGCTAATTAGGTCAAAGAATGGCAACCGGCCAGGCAGCAACGGGGTGGAATGA 1041 0.4717 MNRHNNRSVNRSFKKSVNYHADHDAASSSESCASSGGGEINSTVLPRRTVFGERFAKLEEGEKVRNIMESKFVRWLESHELEHEVVVVHRNVCSNVMLQAKVHCFHIFMRAVAKLREGDPNVKYAWYGASSKGEIDDIVEHGFGGKNLNNGLRLSPEDSPLESVKRSVADKHGLRHMLLCRVILGRTELVQSGSDQWRPSSEEFDSGVVESVSAPKEYVVWCSKINTHVLPEFVLSFNLPSSSSAGRVKIEQPLRPTSPWMPFPALIALLSRTLPSPDITMINKYHKDYAEKKISRQELIQKVRVIAGDTLLASIIRTFRARKIPASCLKLIRSKNGNRPGSNGVE 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1081 346 ProSiteProfiles PARP catalytic domain profile. 42 261 IPR012317 GO:0003950
Lal19g1081 346 PANTHER INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO4 20 329 - -
Lal19g1081 346 ProSiteProfiles RST domain profile. 254 325 IPR022003 -
Lal19g1081 346 Pfam RCD1-SRO-TAF4 (RST) plant domain 255 320 IPR022003 -
Lal19g1081 346 SUPERFAMILY ADP-ribosylation 58 242 - -
Lal19g1081 346 Gene3D - 54 238 - -
Lal19g1081 346 PANTHER INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO4-RELATED 20 329 IPR044964 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1081 Lal-Chr19 14509537 14512780 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1081 - - adu:107491749 342.813
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1081 19 14509537 14512780 Lal19g1081 19 14509537 14512780 ECH
Lal19g1081 19 14509537 14512780 Lal4g1126 4 14608785 14612258 PCT
Lal4g1126 4 14608785 14612258 Lal19g1081 19 14509537 14512780 PCT