Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1033 ATGGTGAAGCCTGATGGTGTTCAACGTGGCCTTGTGGGAGAAATTATTACTAGGTTTGAGAAAAAGGGGTTTAAGTTAACTGGCTTGAAACTCTTTCAGTGTTCTAAAGATTTAGCTGAGGAGCATTATAAGGACTTAAAAGGAAAGTCATTCTTCCCTAAGTTGATTGACTATATTACTTCAGGTCCTGTTGTGTGCATGGCTTGGGAGGGTGTTGGAGTTGTGGCATCTGCACGTAAGCTTATCGGCTCTACAGATCCTCTTAAAGCTGAACCGGGCACAATAAGAGGAGATCTCGCTGTTCAAATCGGAAGGAATATTGTTCATGGTAGTGACAGCCCTGAGAATGGCAAGTGTGAGATAGGTCTATGGTTCAATGAAGCCGAAATAGTTCAATGGACTCCTGCCCAAGCAGCATGGCTTAGAGAATAG 432 0.4352 MVKPDGVQRGLVGEIITRFEKKGFKLTGLKLFQCSKDLAEEHYKDLKGKSFFPKLIDYITSGPVVCMAWEGVGVVASARKLIGSTDPLKAEPGTIRGDLAVQIGRNIVHGSDSPENGKCEIGLWFNEAEIVQWTPAQAAWLRE 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1033 143 Hamap Nucleoside diphosphate kinase [ndk]. 1 130 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Lal19g1033 143 ProSitePatterns Nucleoside diphosphate kinases active site. 106 114 IPR023005 -
Lal19g1033 143 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 1 142 - -
Lal19g1033 143 SUPERFAMILY Nucleoside diphosphate kinase, NDK 1 141 IPR036850 -
Lal19g1033 143 CDD NDPk_I 1 125 - -
Lal19g1033 143 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE II, CHLOROPLASTIC 1 142 - -
Lal19g1033 143 Gene3D - 1 143 IPR036850 -
Lal19g1033 143 PRINTS Nucleoside diphosphate kinase signature 42 61 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Lal19g1033 143 PRINTS Nucleoside diphosphate kinase signature 62 79 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Lal19g1033 143 PRINTS Nucleoside diphosphate kinase signature 83 99 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Lal19g1033 143 PRINTS Nucleoside diphosphate kinase signature 106 125 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Lal19g1033 143 SMART ndk_5 1 132 IPR034907 -
Lal19g1033 143 Pfam Nucleoside diphosphate kinase 1 130 IPR034907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1033 Lal-Chr19 14154962 14157703 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1033 K00940 - pop:7458369 264.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1033 19 14154962 14157703 Lal19g1033 19 14154962 14157703 ECH
Lal14g1475 14 15778455 15781203 Lal19g1033 19 14154962 14157703 LSH