Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1029 ATGAAGAGATATGCTGAGTTTGAGCGTGTTCTAAGCTATTTTGATGAAGATGGGGATGGTAGAATTTCACCATCTGAGCTTAGAAAAATGCTTTGTAAGATGGGTGGGGAGCTTTTGCTGAAAGAAGCTGAAATGGTTATTGAGGCAATGGATTCGGATGGTGATGGTTTACTTTGTTTAGAGGATTTTGCAAAGTTGATGGAAGCAGGTGGAGAAGAAGAAAAGTTGATGGATTTGAGAGAAGCTTTTGAGATTTATGATAAGGAAAAGTGTGGGTTCATAACACCAAAGAGTTTGAAGAGGATGTTGAAAAAGTTGGGGGAGTCTAAGTCTATTGATGATTGCAAATTCATGATTAGTAGGTTTGATTTGAATGGGGATGGCATGCTTAGCTTTGAAGAATTCAGAATTATGATGCAGTGA 423 0.3806 MKRYAEFERVLSYFDEDGDGRISPSELRKMLCKMGGELLLKEAEMVIEAMDSDGDGLLCLEDFAKLMEAGGEEEKLMDLREAFEIYDKEKCGFITPKSLKRMLKKLGESKSIDDCKFMISRFDLNGDGMLSFEEFRIMMQ 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1029 140 CDD EFh 6 67 IPR002048 GO:0005509
Lal19g1029 140 ProSitePatterns EF-hand calcium-binding domain. 51 63 IPR018247 -
Lal19g1029 140 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 3 140 - -
Lal19g1029 140 ProSitePatterns EF-hand calcium-binding domain. 123 135 IPR018247 -
Lal19g1029 140 Gene3D - 73 140 - -
Lal19g1029 140 Gene3D - 2 72 - -
Lal19g1029 140 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Lal19g1029 140 SMART efh_1 42 70 IPR002048 GO:0005509
Lal19g1029 140 SMART efh_1 78 106 IPR002048 GO:0005509
Lal19g1029 140 SMART efh_1 6 34 IPR002048 GO:0005509
Lal19g1029 140 SMART efh_1 114 140 IPR002048 GO:0005509
Lal19g1029 140 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 3 140 - -
Lal19g1029 140 ProSiteProfiles EF-hand calcium-binding domain profile. 38 73 IPR002048 GO:0005509
Lal19g1029 140 ProSiteProfiles EF-hand calcium-binding domain profile. 110 140 IPR002048 GO:0005509
Lal19g1029 140 CDD EFh 78 140 IPR002048 GO:0005509
Lal19g1029 140 ProSiteProfiles EF-hand calcium-binding domain profile. 2 37 IPR002048 GO:0005509
Lal19g1029 140 Pfam EF-hand domain pair 78 140 IPR002048 GO:0005509
Lal19g1029 140 Pfam EF-hand domain pair 9 68 IPR002048 GO:0005509
Lal19g1029 140 ProSitePatterns EF-hand calcium-binding domain. 15 27 IPR018247 -
Lal19g1029 140 SUPERFAMILY EF-hand 3 139 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1029 Lal-Chr19 14126774 14127196 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1029 6 140 EF-hand Containing Proteins AT1G76650 52.593 4.38e-42 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1029 K13448 - gmx:100798531 226.868
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1029 19 14126774 14127196 Lal19g1029 19 14126774 14127196 ECH