Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1013 ATGCCGGAAGAGGATTTGGTGGAAATAAAATTCAGGTTGTACGATGGCTCCGATATTGGACCCTTCAGGTACTCTTCTGCCGCCACTGTTGATGTGCTTAAGCAAAGGATTGTTTCCGATTGGCCTAAAGGTAAAACTGTCATCCCAAAGGCAGCAAATGAAGTGAAATTGATTAGTTCTGGTAAAATCTTGGAAAACAACAAGACTGTTGGTCAGTGTAAAGGACCACTTGGTGACATTGGAGGGGGAGTATTAATAATGCATGTTGTTGTACAGCCATCTCTAGCAAAAACAAAAGGTGAAAAGAAGATTGATGGTTCACCTAAGAAGGTTATGTGCTCTTGTTCCATATTGTGA 357 0.4118 MPEEDLVEIKFRLYDGSDIGPFRYSSAATVDVLKQRIVSDWPKGKTVIPKAANEVKLISSGKILENNKTVGQCKGPLGDIGGGVLIMHVVVQPSLAKTKGEKKIDGSPKKVMCSCSIL 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1013 118 PIRSF MUB 1 118 IPR017000 -
Lal19g1013 118 PANTHER UBIQUITIN-LIKE PROTEIN 3 HCG-1 PROTEIN 1 118 IPR040015 -
Lal19g1013 118 CDD Ubl_MUBs_plant 6 93 - -
Lal19g1013 118 PANTHER MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 3 1 118 - -
Lal19g1013 118 Pfam Ubiquitin-2 like Rad60 SUMO-like 6 116 IPR039540 -
Lal19g1013 118 ProSiteProfiles Ubiquitin domain profile. 7 73 IPR000626 GO:0005515
Lal19g1013 118 SUPERFAMILY Ubiquitin-like 2 97 IPR029071 -
Lal19g1013 118 Gene3D - 1 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1013 Lal-Chr19 14001736 14004173 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1013 - - gmx:100810070 213.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1013 19 14001736 14004173 Lal7g0868 7 15227647 15231495 ECH
Lal19g1013 19 14001736 14004173 Lal19g1013 19 14001736 14004173 ECH
Lal14g1443 14 15595332 15599666 Lal19g1013 19 14001736 14004173 LSH
Lal7g0868 7 15227647 15231495 Lal19g1013 19 14001736 14004173 LSH