Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0285 ATGCAACCAGCACCAAAGAAACATAGAAGTGTGGTGTGGGAACATTTTCAAAAGATTAAAGTGAATGGGGTTGACAAGGCTGAATGCAAATATTGTAGGAAACAACTCGGCGGAAGTTCAAGGAATGGAACAAAACACTTGCACAACCATATGGAGTTATGTGTTCAAAAAAAGATTATGACTAAAGGTCATGACAAAGGGCAGACATTTCTACTTCCTAAAGCCTTACAAGGTAAGCAAGAGTTGGGAGTTGGAACTTATGATACAGAAAATACGAAAAGGGAGCTTGCGAATGCAATTATTATGCATGATTATCCGCTATCAATAGTGGATCATATTGGTTTTAGGAGGTACTCGGCTGCCCTCCAACCATTGTTTCAAGTTCCTTCTCGAAACACTATCAAGAAGGAGATATTCAAAGTGTATGATTTTGAGAGAGAATGTGCAATGAAGATGTTGGATAGTCATGAAGGAAGAGTGGCTATTACCTCAGATATGTGGACTTCAAGTAATCAAAAGAGGGGGTATATGGCAGTCACAGCTCACTATATTGATTGCTCTTGGACTTTACAAAGTCGAGTATTGAGGTTCATTTATGTTCCTGCTCCTCACAGTAGTGATATACTTTCTAATGTGCTGGTTGAATGCTTTATGGATTGGAACATTGACACAAAAATATCAACTATTACTCTAGATAATTGTAGTTCAAATGATGCCATGATTCCAAAAATCAAGGATAAGTTGCGATTGGGAAATTTGTTGAGGGATGGGTCTTTACTTCATATGCGTTGTTGTGCACATATCCTAAATTTAATAGTTAAAGATGGTTTAGAAGTTGTGAAAGATGGGATAGAAAAGATTCGAGATAGTGTAGCATATTGGAATGCTACACCAAAAAGGAACGAAAAGTTTGAGGAGACTGCTAAACAATTGCGAGTTCCTTACACTAAAAAGTTGATTTTAGATTGCCCAACTAGATGGAATTCAACGTACAAAATGCTTGAGGTTGCCATATTATATAAGGATGTATTTAATCGGTTAAGAAACCGTGACACTCAATACACTTGTTTGCCAAGTAATTCACAATGGCAATTTGCAGAAGATGTTTGTGAGCGACTAAAATTGTTTAATTCCATAACTGAGATGATTTCTGGTAATAAATATCCAACTGCCAACATATATTTTCCCAAGATTTGTCAAATTAAGTTAGCAATAAGTCAATGGATGAACTCCTCTAATGAATTCATTAAGAGGATGGCAGAGAATATGATGACTAAGTTTGAAAAGTATTGGATCTTGGATCCTAGATATAAAATGGCATTACTTGAATTCTATTTTGATAAGTTGTATGATCATGATGCATGTACGCAAGTTAGCAAAATCCGAGAGTTGTGTTATGATTTAGTGTCTGATTATCAACAAACTAAAATATCTAGTGGAAGCTCTCTATTGATAAATAGAACTGTTGCTAATGATGAACCTTTGGATGAATATGATGTGTTTATCGAGAGGAGGAGAGAAACTAGAAGTTCAAGTGTTAAAACTGAGTTGGATCATTACTTGGAGGAGGATGTTATTAAAAGGACACCTGATTTTGACATTTTAAATTGGTGGAAGACAAATGGAATCATGTATCCAACACTTCAAGCAATTGCAAAAGATTTGTTAGCTATTCCTATTTCTACTGTAGCTTCTGAATCTACGTTCAGTACAAGTGGCCGAATATTGAGCCCTCATCGTAGTCGACTTAATTGGACTACATTAGAAGCTTTGATGTGCGCTAGAAGTTGGCTATGGTCTGCTGAGAATGCTGGAAATTTGAATTCAAGTCTCAGAGAAGAATATGCCACTGTTTTGAATGAAATGGAATCCGATGATGAAGCTGAAGTGATGAATAATAATTTGAGTTATAATTTTGAAGATTAA 1926 0.3583 MQPAPKKHRSVVWEHFQKIKVNGVDKAECKYCRKQLGGSSRNGTKHLHNHMELCVQKKIMTKGHDKGQTFLLPKALQGKQELGVGTYDTENTKRELANAIIMHDYPLSIVDHIGFRRYSAALQPLFQVPSRNTIKKEIFKVYDFERECAMKMLDSHEGRVAITSDMWTSSNQKRGYMAVTAHYIDCSWTLQSRVLRFIYVPAPHSSDILSNVLVECFMDWNIDTKISTITLDNCSSNDAMIPKIKDKLRLGNLLRDGSLLHMRCCAHILNLIVKDGLEVVKDGIEKIRDSVAYWNATPKRNEKFEETAKQLRVPYTKKLILDCPTRWNSTYKMLEVAILYKDVFNRLRNRDTQYTCLPSNSQWQFAEDVCERLKLFNSITEMISGNKYPTANIYFPKICQIKLAISQWMNSSNEFIKRMAENMMTKFEKYWILDPRYKMALLEFYFDKLYDHDACTQVSKIRELCYDLVSDYQQTKISSGSSLLINRTVANDEPLDEYDVFIERRRETRSSSVKTELDHYLEEDVIKRTPDFDILNWWKTNGIMYPTLQAIAKDLLAIPISTVASESTFSTSGRILSPHRSRLNWTTLEALMCARSWLWSAENAGNLNSSLREEYATVLNEMESDDEAEVMNNNLSYNFED 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0285 641 PANTHER BED FINGER-RELATED 6 57 IPR045259 -
Lal19g0285 641 PANTHER BED FINGER-RELATED 80 600 IPR045259 -
Lal19g0285 641 Pfam hAT family C-terminal dimerisation region 516 598 IPR008906 GO:0046983
Lal19g0285 641 PANTHER ZINC FINGER BED DOMAIN-CONTAINING PROTEIN RICESLEEPER 1-LIKE 80 600 - -
Lal19g0285 641 PANTHER ZINC FINGER BED DOMAIN-CONTAINING PROTEIN RICESLEEPER 1-LIKE 6 57 - -
Lal19g0285 641 SUPERFAMILY beta-beta-alpha zinc fingers 10 59 IPR036236 -
Lal19g0285 641 SMART bed5 7 57 - -
Lal19g0285 641 Pfam BED zinc finger 10 52 IPR003656 GO:0003677
Lal19g0285 641 Pfam Domain of unknown function (DUF4413) 384 472 IPR025525 GO:0003677
Lal19g0285 641 ProSiteProfiles Zinc finger BED-type profile. 7 64 IPR003656 GO:0003677
Lal19g0285 641 SUPERFAMILY Ribonuclease H-like 151 598 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0285 Lal-Chr19 2878305 2883039 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0285 - - gmx:100796027 934.095