Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0062 ATGAAGAGTGTTGCGGTAAAGAAGACAACCTCGGAAGAATCGAACGGTGTTTCTGCTTCCGCTGCTATTCCTGTTGGTGACGTGGCAATAGGTGGTGAATTTGTTGCTGTTGGTGGTGGTGCTGACGTGGCAATGTGTGGTGGTGAATTTGGTGCTGTTGGTGGTAGTGATGGTGGTGACGTGGCAGTGGGTGTTGCTGAATTTGTTGGTGGTGGTGTTGAAAAGGAGAATAACCAGAATAAAGGAAGAGAGGATTATGAAGAAGAAGAGAAACATGATGATGATGATGATGGAAACAAACTTCCTCATCTTTCTGCTGATTCTGAGTTGTATCCGGTTCAAGCTATTCGCCGGAAGAGGGTCATAAAGGGTCAGGTCCAGTACCTGGTAAAATGGCTTGGATGGGCCGAGTCGGCCAACACTTGGGAGCCTCCAGAACATCTAACTAATGTTCGTGACATGATCGAGGCTTTTGAGCAGAGATTAGCAGCTTATAAACATAGCTTGGCATCAGCAAAACAGCGTAAGCCTAAGCGCACGAGTGTGTCTAGTCACTCTCAAACAAAGAAGAGGCAGGAGCGTTCTGATACTCCTTACAGCCTTAGACGTATTCGCAATGCTAATGCTGACAAACATACACAGTCTGCTCCTCCAAATGTTGCTAATATTACCGATCCTTGTGCTTTTCCTCAAGCTGTGCTTTTTGCTGATGAATTAGAACACAATGGCGATCCCAGCAGTTCTGGAAAAGCCAAACTTTCTAATGGCAGCGGGTCTACAAATCCTCCAGAACTTTCTAAAAGCAATGAGGAAAATGAGTATGATCCCAAGCTTATTGAGCTAAAAGCAGCCTCAACCAGTGGGCATGGTACAGCAGACAGGCTTGTGACACAGGTTCAAGAAGGTAATGTTGCAGCCGACAATGGTCAGGTGGATGGTCGGTTGAAGGGTGTTAATGTGGAACAAGATCAAAGTGACAACTCCAAAGGAGTTAAAAGGAAGAAATCTTGTTCTGCAAAGAACTCAAAGGAGGATTCACATGCTGGTGAGTCTTCTAGTGCAGAACAACCAATCGACATACCCGCTAGCACATCTGAACCAGTACGAGCAGCGGTGTCCGATTTTGTGTGGCATAAGAGTCAGAAAAAGAAGAAGAAGGTTCTTGCTGCACCTGCACCTGCACCTGCACCTGTCTCCAATATTACCAAGATTATAAAGTCATTAGGCTGTTCACCTACAGTATCTGGCGATCTGTGCGTGACCTTTATAGCCTTGAGATGGGACGGAATGGAAGTGATGGTCGACAACAGATATCTCAAGTCACACTATCCGGATCTGCTCATCGACTTCTACGAGAATCGTATCAACTGCAACACTCCCTGA 1383 0.4591 MKSVAVKKTTSEESNGVSASAAIPVGDVAIGGEFVAVGGGADVAMCGGEFGAVGGSDGGDVAVGVAEFVGGGVEKENNQNKGREDYEEEEKHDDDDDGNKLPHLSADSELYPVQAIRRKRVIKGQVQYLVKWLGWAESANTWEPPEHLTNVRDMIEAFEQRLAAYKHSLASAKQRKPKRTSVSSHSQTKKRQERSDTPYSLRRIRNANADKHTQSAPPNVANITDPCAFPQAVLFADELEHNGDPSSSGKAKLSNGSGSTNPPELSKSNEENEYDPKLIELKAASTSGHGTADRLVTQVQEGNVAADNGQVDGRLKGVNVEQDQSDNSKGVKRKKSCSAKNSKEDSHAGESSSAEQPIDIPASTSEPVRAAVSDFVWHKSQKKKKKVLAAPAPAPAPVSNITKIIKSLGCSPTVSGDLCVTFIALRWDGMEVMVDNRYLKSHYPDLLIDFYENRINCNTP 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0062 460 SUPERFAMILY Chromo domain-like 102 164 IPR016197 -
Lal19g0062 460 MobiDBLite consensus disorder prediction 326 350 - -
Lal19g0062 460 MobiDBLite consensus disorder prediction 240 272 - -
Lal19g0062 460 MobiDBLite consensus disorder prediction 304 363 - -
Lal19g0062 460 MobiDBLite consensus disorder prediction 72 106 - -
Lal19g0062 460 Gene3D - 72 166 - -
Lal19g0062 460 Coils Coil 155 175 - -
Lal19g0062 460 MobiDBLite consensus disorder prediction 169 201 - -
Lal19g0062 460 ProSitePatterns Chromo domain signature. 128 148 IPR023779 -
Lal19g0062 460 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 75 456 IPR044251 GO:0006325|GO:0031507
Lal19g0062 460 MobiDBLite consensus disorder prediction 171 185 - -
Lal19g0062 460 Pfam Chromo (CHRromatin Organisation MOdifier) domain 113 161 IPR023780 -
Lal19g0062 460 SMART chromo_7 110 163 IPR000953 -
Lal19g0062 460 MobiDBLite consensus disorder prediction 186 201 - -
Lal19g0062 460 ProSiteProfiles Chromo and chromo shadow domain profile. 111 170 IPR000953 -
Lal19g0062 460 CDD CD_CSD 111 160 - -
Lal19g0062 460 MobiDBLite consensus disorder prediction 247 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0062 Lal-Chr19 471595 474715 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0062 - - lang:109359412 541.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g0178 14 1941289 1944580 Lal19g0062 19 471595 474715 LSH