Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1624 ATGGTTAAGAGAGATATTATCATGTTGCAGTGCGTAGAGGGAATTTTGCATCTATTTGCTCCCATTTTGCGATGTTGTGACCTTGATTTAAATAAGCAGCCAACAGGCCTTGAAGATCCTGAACTTCTTGCAAGGGAAACAGTGTTCAGTGTAAGTGAAATCGAAGCACTTTATGAGCTCTTTAAAAAAATCAGCAGTGCTGTGATTGATGATGGGCTGATTAACAAGGAAGAGTTTCAATTGGCCTTATTCAAAACAAATAAAAAAGAGAGCTTGTTTGCGGATCGGGTGTTTGATTTGTTTGACACAAAGCACAATGGGATACTTGGTTTTGAAGAGTTTGCTCGTGCTCTCTCCGTTTTCCATCCAAATGCCCCTATCGATGATAAGATTGAATTTTCCTTTCAATTGTATGATCTAAAGCAGCAGGGTTTTATTGAAAGGCAAGAGGTGAAGCAAATGGTAGTGGCTACACTTGCTGAATCTGGCATGAACCTATCGGATGATATAATAGAGAGTATAATTGACAAGACTTTCGAGGAAGCAGATACGAAACATGATGGCAGGATTGACAAGGAGGAGTGGAGAAGCCTTGTTTTGCGCCACCCTTCACTATTGAAGAACATGACCCTTCAATATCTCAAGGACATCACCACAACATTCCCAAGCTTTGTATTCCATTCACAAGTAGATGATACCTGA 702 0.4017 MVKRDIIMLQCVEGILHLFAPILRCCDLDLNKQPTGLEDPELLARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLSDDIIESIIDKTFEEADTKHDGRIDKEEWRSLVLRHPSLLKNMTLQYLKDITTTFPSFVFHSQVDDT 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1624 233 PANTHER CALCINEURIN B 8 233 IPR045198 GO:0005509|GO:0019722|GO:0019900
Lal18g1624 233 PRINTS Recoverin family signature 97 118 - -
Lal18g1624 233 PRINTS Recoverin family signature 144 162 - -
Lal18g1624 233 PRINTS Recoverin family signature 190 210 - -
Lal18g1624 233 ProSiteProfiles EF-hand calcium-binding domain profile. 126 161 IPR002048 GO:0005509
Lal18g1624 233 Pfam EF-hand domain pair 71 116 IPR002048 GO:0005509
Lal18g1624 233 ProSiteProfiles EF-hand calcium-binding domain profile. 89 124 IPR002048 GO:0005509
Lal18g1624 233 Gene3D - 39 233 - -
Lal18g1624 233 SMART efh_1 130 158 IPR002048 GO:0005509
Lal18g1624 233 SMART efh_1 93 121 IPR002048 GO:0005509
Lal18g1624 233 SMART efh_1 174 202 IPR002048 GO:0005509
Lal18g1624 233 PANTHER CALCINEURIN B-LIKE PROTEIN 3 ISOFORM X2 8 233 - -
Lal18g1624 233 SUPERFAMILY EF-hand 40 225 IPR011992 -
Lal18g1624 233 Pfam EF-hand domain pair 129 195 IPR002048 GO:0005509
Lal18g1624 233 ProSiteProfiles EF-hand calcium-binding domain profile. 170 205 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1624 Lal-Chr18 17643661 17653989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1624 8 233 EF-hand Containing Proteins AT5G55990 90.708 9.49e-150 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1624 K06268 - fve:101301472 428.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1624 18 17643661 17653989 Lal18g1624 18 17643661 17653989 ECH