Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1588 ATGTTATTCTATAATGCTCTGTTTCGTGTCTCTAGGACAATTTCCCGAACCTCCACGCTTCTTTCTGCTTCCCACAGATCTCAACATTACTCTTCTACTTTTTCTAATCACTTCCATTCTCTTCTTTCCCTATCACCCACTAAGTTGATTCCCGTTCAAGTCAATTTGTCACCTCCGCTAAAAAGTTCATCCTTCACTTCAAGATTTGGATTTTCTTCGCCAGCCTCTTCTGAAACTACTGAAAAGGAAAAACGTAATAACTTGCATAATGGAGAATCTACAAATGATGACCGAGCGAAAACAAGTGAAAAGGTGAAGAAGGTCGATCAGGCTGGACAAGCTGTAGATCAAACCGAAGAATCTGGTTCTAATTCTGATTCTCAAACAGTCAAAAGGAGAGGTTCTAAACGAACTGCCTTTTCTGATTCAGAATCAGATTCAGAGAGTGAAGATGATCTCTCCAGGGATGATTTAATTAAGCTTGTGACTGAGAAGGAAGAACTTTTGAAGTTGAAGCACAAAGAGATTGAGACAATGAAAGATAAAGTTTTGCGTACTTACGCAGAGATGGAGAATGTCATGGACAGAACTAGACGTGAAGCAGAGAACTCAAAAAAATTTGCTATCCAGAATTTTGCGAAGGGTTTACTCGATGTTGCGGACAATTTGGGAAGAGCTTCCTCTGTTGTAAAGGAAAGTTTTTCAAAAATTGAGTCACCAGATGGCTCTGCTGAAGTGGTAAAACTCCTGAAAACACTTCTAGAAGGTGTTGAAATGACTGAAAAACAACTTTCAGAGGTACTTAAAAAATTTGGCGTTGAAAAATATGATCCTATAAATGAGCCATTTGATCCACACAGGCATAATGCCATCTTCCAAATCCCTGATGGTTCTAAGCCTCCAGGCACTGTTGCAGCCGTTCTGAAGGTAGGATATATGCTATATGATCGCGTTATTCGTCCAGCAGAAGTTGGTGTAACCCAAGCAGTGGAGGATAACAATGCAACAGAATGA 1014 0.3994 MLFYNALFRVSRTISRTSTLLSASHRSQHYSSTFSNHFHSLLSLSPTKLIPVQVNLSPPLKSSSFTSRFGFSSPASSETTEKEKRNNLHNGESTNDDRAKTSEKVKKVDQAGQAVDQTEESGSNSDSQTVKRRGSKRTAFSDSESDSESEDDLSRDDLIKLVTEKEELLKLKHKEIETMKDKVLRTYAEMENVMDRTRREAENSKKFAIQNFAKGLLDVADNLGRASSVVKESFSKIESPDGSAEVVKLLKTLLEGVEMTEKQLSEVLKKFGVEKYDPINEPFDPHRHNAIFQIPDGSKPPGTVAAVLKVGYMLYDRVIRPAEVGVTQAVEDNNATE 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1588 337 MobiDBLite consensus disorder prediction 78 110 - -
Lal18g1588 337 MobiDBLite consensus disorder prediction 67 154 - -
Lal18g1588 337 MobiDBLite consensus disorder prediction 114 129 - -
Lal18g1588 337 PANTHER GRPE PROTEIN 8 108 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lal18g1588 337 PANTHER GRPE PROTEIN 111 330 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lal18g1588 337 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 273 328 IPR009012 GO:0006457
Lal18g1588 337 Pfam GrpE 162 327 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lal18g1588 337 Gene3D - 159 271 IPR013805 -
Lal18g1588 337 PANTHER GRPE PROTEIN HOMOLOG 8 108 - -
Lal18g1588 337 PANTHER GRPE PROTEIN HOMOLOG 111 330 - -
Lal18g1588 337 CDD GrpE 177 326 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lal18g1588 337 Coils Coil 180 200 - -
Lal18g1588 337 Gene3D Head domain of nucleotide exchange factor GrpE 272 327 IPR009012 GO:0006457
Lal18g1588 337 MobiDBLite consensus disorder prediction 130 144 - -
Lal18g1588 337 PRINTS GrpE protein signature 184 200 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lal18g1588 337 PRINTS GrpE protein signature 280 295 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lal18g1588 337 PRINTS GrpE protein signature 307 326 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lal18g1588 337 Hamap Protein GrpE [grpE]. 116 328 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lal18g1588 337 ProSitePatterns grpE protein signature. 283 326 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lal18g1588 337 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 164 272 IPR013805 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1588 Lal-Chr18 17423146 17426957 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1588 K03687 - gmx:100803396 405.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1588 18 17423146 17426957 Lal18g1588 18 17423146 17426957 ECH