Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1372 ATGTCTAAACAAACATACAGTGTGTGTTTCTGTTGTCGCCGCCGCTTCAAACTCGCCTTGGCGGAGGCGCCACCGGAGATCAAGACCCTTTTTCATGCTTACTCTGATAACGAACTTATGACACCTTCTCAACTTCAAAGGTTTCTTATCGAGATCCAGAAACAAGAGAAAGCCACCATAGAAGATGCTCAAGCCATCATCGATTCTCTAAAGCATTTCCATCGCAAGGGTCTCAATCTTGAAACTTTCTTCAACTACCTCTTTAGTGATAATAACCTTCCTCTCATACCTTCTCTTGGGGTGCACCATGATATGACTTTACCCTTGTCTCATTATTTCATATATACCGGGCATAATTCTTATCTAACTGGGAATCAGCTTAGCAGCGATTGCAGTGACGTCCCGATCATACATGCTCTGAAGAGAGGTGTAAGGGTGATTGAATTGGACATATGGCCTAATGCATCAAAGGACAATGTGGATGTTCTTCATGGAAGGACGTTGACTACTCCTGTGGAGCTTATAAGATGTTTGAGGGCTATTAAGGAACACGCCTTTGTTACATCGGAATATCCAGTTGTTATAACCCTAGAAGACCACCTTACTCCAGATCTTCAGGCTAAAGTGGCTGAGATGGTTACTCAAACATTTGGAGACATACTATTTTCTCCTAGTACAGAAAGCATGAAGGAATTCCCTTCTCCGGAACTACTTAAGAAGAGGATTATTATATCAACGAAACCACCAAAGGAGTACCTTGAGGCAAAAGAAATAAAGGAAAAAGGGGATGATTCACAGCATGGAAAGGCTTCAGGCGAAGATGAAGCTTGGGGAAAGGATGTCCCAAGCATGAAACGTGGTACTACCGCTGATGTCAAGGACATCAATGTGGATGAAGTTCTTAATGATGAGGAAGATACTGATGAATCGGACAAGTCACATCATAATGAAGCACCGGAATATAGACATCTAATTGCAATTCATGCTGGGAAGCCTAAAGGTGGCATACATGAATGGCTCAAAGTGGATCCTGATAAAGTGAGACGTCTAAGTTTAAGTGAGGCACAGCTTGAAAAGGCTGCTATAACTCTTGGGAAAGAAATTGTCAGGTTTACCCAGAGGAATATACTGAGGGTGTATCCAAAAGGTACTCGCATTACTTCGTCAAATTATAACCCATTAGTTGGGTGGATGCATGGAGCTCAAATGGTTGCATTTAACATGCAGGGTAATGGCAGATCACTTTGGTTGATGCATGGAATGTTCAAAGCCAATGGAGGGTGTGGTTATGTTAAAAAGCCAGATTTTCTATTAAAGACTGGTCCAAATAATGAGGTCTTCGATCCTAAAGCTAAGTTATCTGTGAAGACTACTTTGAAGGTAACTGTATATATGGGAGAAGGGTGGTACTATGATTTTAAGCACACACACTTCGATCAATATTCGCCTCCAGACTTCTACACAAGAGTAGGGATAGCTGGAGTCCCAGATGATACTGTAATGAAGAGAACTAAGGCAATAGAGGATAATTGGTTGCCTACATGGAATGAGGTATTCGAGTTCCCACTTACTGTTCCGGAATTGGCGCTGCTTCGCATAGAAGTTCACGAGTATGACATGTCTGAGAAGGATGACTTTGGTGGACAAACAGTCCTTCCTGTATGGGAACTAAGAAGTGGAATTCGAGCTGTTCCGCTCTATAGCCAAAAGGGAGAAAAATACGACTCCGTAAAACTTCTTATGCATTTCGAATTTTCTTGA 1761 0.4202 MSKQTYSVCFCCRRRFKLALAEAPPEIKTLFHAYSDNELMTPSQLQRFLIEIQKQEKATIEDAQAIIDSLKHFHRKGLNLETFFNYLFSDNNLPLIPSLGVHHDMTLPLSHYFIYTGHNSYLTGNQLSSDCSDVPIIHALKRGVRVIELDIWPNASKDNVDVLHGRTLTTPVELIRCLRAIKEHAFVTSEYPVVITLEDHLTPDLQAKVAEMVTQTFGDILFSPSTESMKEFPSPELLKKRIIISTKPPKEYLEAKEIKEKGDDSQHGKASGEDEAWGKDVPSMKRGTTADVKDINVDEVLNDEEDTDESDKSHHNEAPEYRHLIAIHAGKPKGGIHEWLKVDPDKVRRLSLSEAQLEKAAITLGKEIVRFTQRNILRVYPKGTRITSSNYNPLVGWMHGAQMVAFNMQGNGRSLWLMHGMFKANGGCGYVKKPDFLLKTGPNNEVFDPKAKLSVKTTLKVTVYMGEGWYYDFKHTHFDQYSPPDFYTRVGIAGVPDDTVMKRTKAIEDNWLPTWNEVFEFPLTVPELALLRIEVHEYDMSEKDDFGGQTVLPVWELRSGIRAVPLYSQKGEKYDSVKLLMHFEFS 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1372 586 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 458 585 IPR035892 -
Lal18g1372 586 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 103 247 - -
Lal18g1372 586 SUPERFAMILY EF-hand 17 105 IPR011992 -
Lal18g1372 586 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 2 585 IPR001192 GO:0035556
Lal18g1372 586 Pfam Phosphatidylinositol-specific phospholipase C, X domain 105 247 IPR000909 -
Lal18g1372 586 PRINTS Phospholipase C signature 108 126 IPR001192 GO:0035556
Lal18g1372 586 PRINTS Phospholipase C signature 134 154 IPR001192 GO:0035556
Lal18g1372 586 PRINTS Phospholipase C signature 231 248 IPR001192 GO:0035556
Lal18g1372 586 PRINTS Phospholipase C signature 376 397 IPR001192 GO:0035556
Lal18g1372 586 PRINTS Phospholipase C signature 397 415 IPR001192 GO:0035556
Lal18g1372 586 PRINTS Phospholipase C signature 552 562 IPR001192 GO:0035556
Lal18g1372 586 SMART plcy_3 321 438 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Lal18g1372 586 SUPERFAMILY PLC-like phosphodiesterases 103 439 IPR017946 GO:0006629|GO:0008081
Lal18g1372 586 Gene3D C2 domain 452 586 IPR035892 -
Lal18g1372 586 SMART plcx_3 103 247 IPR000909 -
Lal18g1372 586 SMART C2_3c 458 566 IPR000008 -
Lal18g1372 586 Gene3D Phosphatidylinositol (PI) phosphodiesterase 100 451 IPR017946 GO:0006629|GO:0008081
Lal18g1372 586 Pfam C2 domain 459 560 IPR000008 -
Lal18g1372 586 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 351 437 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Lal18g1372 586 MobiDBLite consensus disorder prediction 257 319 - -
Lal18g1372 586 PANTHER PHOSPHOINOSITIDE PHOSPHOLIPASE C 2 585 - -
Lal18g1372 586 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 350 436 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Lal18g1372 586 MobiDBLite consensus disorder prediction 257 281 - -
Lal18g1372 586 CDD C2_PLC_like 456 586 - -
Lal18g1372 586 Gene3D - 21 97 - -
Lal18g1372 586 Pfam Phosphoinositide-specific phospholipase C, efhand-like 26 90 IPR015359 -
Lal18g1372 586 ProSiteProfiles C2 domain profile. 439 568 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1372 Lal-Chr18 16056419 16061199 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1372 1 585 Acyl Lipid Metabolism Gene Families AT3G55940 70.051 0.0 826
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1372 K05857 - gmx:547864 1052.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1372 18 16056419 16061199 Lal18g1372 18 16056419 16061199 ECH
Lal18g1372 18 16056419 16061199 Lal18g1372 18 16056419 16061199 PCT