Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1327 ATGCCTTTCATTTCAAAAATTGAGCGTCAATCTGATTACAATCTCTTCCCTTCCTCAACTCCTATCGTTATCGACAATGGCGCTTCATATTTTCGTATAGGATGGGCTGGAGAATCTGAGCCCCGTGTTGTTTTCCGCAACATTGTTCAAAGGCCACGCCATAAAGTAACCGGTGAAACCATTACTATTGTTGGTGACCATGATCCTGCATTATTTAAATACTTTGATTGTAGTCGATCAGGGCCACGCTCAGCATTTGAGAACAATGTTGTTTCCCAATTTGAAATAATGGAATATGTTCTTGATTTTGGATTTGACCGATTGGGTGCAAATGGATCAGAGATTAATCATCCTGTCCTGATCACAGAATGTGTGTGCAATCCAGTTCAATCTCGTAGAAATATGGCAGAACTTCTGTTTGAGACTTATGGAGTTCCATCAATCGCCTTTGGTGTTGATGCAGCATTCAGTTATAAGTATAATCAACAACAAGGGGTTTGTGCAAAAGATGGTCTTGCTTTGTGTCCTGGATTTATCACAACCCATGTCATTCCGTTTGTAGATGGGGAGCCAATTTATAAAGGATGCTGCCGTACTAATGTTGGTGGATTCCATGTGACTGATCATTTAAAGCAACTTCTTTCACTTAAATATCCTTATCATTTTGCTAGATTTACATGGGAAAAGGTTGAAGACTTGAAGATGGAACATTGTTACATTGCACCAGATTATGCTTCTGAAGCTCGGTTGTTTCAGAAAGGAGCCAAGGAAGCTGAAGAGAAAACAAGATGTTGGCAGCTCCCTTGGGTTCCACCCCCAACTGAGCAGCCTCCTTCTGTGGAAGAGATCGCAAGAAAGGCAGCAATTAGAGAGAGACAAGGGCAAAGGCTACGAGAAATGGCTGAGGCGAAGAGGTCATCTAAAATAAATGAACTGGAAAATGAATTGCAAGGTTTGGATTTTCTTCTGCATCAGCTTGATCAAGTGGAAGAGAGTGACATTCCATCTTTCCTGTCAGAAACTGGCTATGTCTCTAGGCAGGAGATAGAATCCGCCCATAATAAAGTTACACAATCTTTGCGGAAGGCAAAAGGTGAACCAAAGAATGAACAAGTTGAAGCCGAAAAGGCTGACCTTTCTACTGATGAGAAGTATTCTCTTATTAACATCCCCGATGACATATTGACCCCAGAGCAGCTCAATGAAAAGAAGAAACAGTTGGCAATCAAATCCATGTCTGAAGGGCGGCAGCGATTAAAACAGAAGCGCTATGAAGAGGAATTGGAACGAGAGAGGAAACAACAGCTAGAGGAGGAAAAACGACTAGAGAACCCAGAGCTTTACTTGGAACAATTGCATGCTAAATACAAAGACCTTTCAGAAAGAGTTGACCAACAAAAACGACTGAAGACAAATGGAGGCAATACAAATGGAAATAATTTGTCTGGTAGTGTTGGCCGTGGTGAGAGACTGAATGCTGCTCAGAGGGAGAGAATGCGCCTCTTGACAACTGCAGCTTTTGACCGTGGTAAGGGTGAGGATACATTTGGTGCCAGAGATGAAGATTGGCAACTGTACAAATTGATGAGCAAAGATAATAATGATGATGATGAGGGACCTGATGAGGATGAGGCAGAGCTGGCCCGTGTCTCTTCCAGGCTAGTGAACTTGGATCCAACATTTATACCAAAGTCAGAAGCTGGAACCTCTCAACCTGCTGAAGTGCCACGTTCTCGTCCTCTTACCAAAGAAGATTTTCAGATTTTTCTGGGGCTGGAAAGGTCCAGATGCCCTGAAATATTGTTTAATCCAAACTGGATTGGGGTGGATCAAGCAGGATTAGATGAGATGACTGGGGTCTCAATAAGGAGGTTGGGATACAAGGATGAAGGCTTTGAAGAGAGACTCACTAGTTCCATACTTATGACTGGTGGAAGTTCTCTTTTCCCTGGTATGGTTGAACGCCTGGAATCTGGAATTCGGATGCTTAGACCATGTGGATCAACTATAAAAATAGCTACCGCATTGAATCCAATTATGGATGCATGGCGTGGGGCTGCTAAATATGCGTCAGACTCGCAGTTCCATACGCAAACTTTCAGTAGAATGGACTACTATGAAAAAGGTGAAGACTGGCTTCGCAATTATCAACTGAAATATACATTATAG 2169 0.4251 MPFISKIERQSDYNLFPSSTPIVIDNGASYFRIGWAGESEPRVVFRNIVQRPRHKVTGETITIVGDHDPALFKYFDCSRSGPRSAFENNVVSQFEIMEYVLDFGFDRLGANGSEINHPVLITECVCNPVQSRRNMAELLFETYGVPSIAFGVDAAFSYKYNQQQGVCAKDGLALCPGFITTHVIPFVDGEPIYKGCCRTNVGGFHVTDHLKQLLSLKYPYHFARFTWEKVEDLKMEHCYIAPDYASEARLFQKGAKEAEEKTRCWQLPWVPPPTEQPPSVEEIARKAAIRERQGQRLREMAEAKRSSKINELENELQGLDFLLHQLDQVEESDIPSFLSETGYVSRQEIESAHNKVTQSLRKAKGEPKNEQVEAEKADLSTDEKYSLINIPDDILTPEQLNEKKKQLAIKSMSEGRQRLKQKRYEEELERERKQQLEEEKRLENPELYLEQLHAKYKDLSERVDQQKRLKTNGGNTNGNNLSGSVGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGARDEDWQLYKLMSKDNNDDDEGPDEDEAELARVSSRLVNLDPTFIPKSEAGTSQPAEVPRSRPLTKEDFQIFLGLERSRCPEILFNPNWIGVDQAGLDEMTGVSIRRLGYKDEGFEERLTSSILMTGGSSLFPGMVERLESGIRMLRPCGSTIKIATALNPIMDAWRGAAKYASDSQFHTQTFSRMDYYEKGEDWLRNYQLKYTL 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1327 722 SUPERFAMILY Actin-like ATPase domain 170 715 IPR043129 -
Lal18g1327 722 SUPERFAMILY Actin-like ATPase domain 18 159 IPR043129 -
Lal18g1327 722 SMART actin_3 19 719 IPR004000 -
Lal18g1327 722 CDD NBD_sugar-kinase_HSP70_actin 22 202 - -
Lal18g1327 722 Gene3D - 591 678 - -
Lal18g1327 722 Pfam Actin 587 714 IPR004000 -
Lal18g1327 722 Pfam Actin 19 268 IPR004000 -
Lal18g1327 722 MobiDBLite consensus disorder prediction 358 379 - -
Lal18g1327 722 Coils Coil 419 445 - -
Lal18g1327 722 PANTHER ACTIN-RELATED PROTEIN 5 15 714 IPR027664 -
Lal18g1327 722 Coils Coil 449 469 - -
Lal18g1327 722 PANTHER ACTIN 15 714 IPR004000 -
Lal18g1327 722 Coils Coil 309 329 - -
Lal18g1327 722 Gene3D Actin; Chain A, domain 4 203 274 - -
Lal18g1327 722 Gene3D - 18 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1327 Lal-Chr18 15734179 15739833 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1327 588 709 Miscellaneous Gene Families AT2G42100 32.787 1.99e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1327 K11672 - gmx:100804305 1236.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1327 18 15734179 15739833 Lal18g1327 18 15734179 15739833 ECH
Lal18g1327 18 15734179 15739833 Lal18g1327 18 15734179 15739833 PCT