Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1196 ATGGCTGTTTCAACCAGTTTCTCTGGTGCAAAGTTGGAAACTTTGTTGCTTAACAAATGTTGTCCCTCTTCTTCAGCACGATTAAATGCTACCCATTTTTCAGTTTTTGGTAAAAACAGAAGAACACTATCAGTTATTCAGAAAGGGGGAATTCGGTGTGATGCTTCTGCTTCTAATGTGTTGGGTGATTCCATTAGTAATGCCACAACTGTTTCAGCTATTGAACAGCTTAAGACTTCTGCAGCTGATAGGTATACAAAGGAAAGGAGCAGTATTGTGGTTATTGGTCTCAGTGTGCATACTACACCTGTGGAAATGCGTGAAAAACTTGCCATTCCGGAAGCAGAATGGCCTAGAGCCATCGGAGAGCTTTGTGGTCTGAATCATATTGAAGAAGCAGCTGTCCTAAGCACCTGCAACCGAATGGAGATATATGTCGTTGCTCTGTCCCAGCACCGTGGTGTCAAAGAAGTCACGGAATGGATGTCAAAAACAAGTGGAATCCCTGTTTCAGAACTTTATGAGCATCGGTTTTTGCTTTACAACAAAGATGCCACACAGCATATTTTTGAAGTATCTGCAGGTCTTGAATCTCTTGTATTGGGAGAAGGTCAAATCCTTGCCCAGGTTAGGCAAGTTGTCAAAGTTGGACAAGGAGTTAATGGCTTTGGGAGGAACATCAGTGGGCTATTCAAGCATGCAATTACTGTCGGAAAGAGGGTTAGAGCGGAGACTAATATTGCTGCTGGGGCAGTATCTGTCAGCTCAGCCGCTGTTGAATTAGCCTTGATGAAGCTACCTGAAACCTCACATGGTAGTGCCAGGATGTTGGTTATTGGAGCTGGAAAGATGGGAAAGCTTGTTATCAAACATTTGGTGGCAAAGGGCTGTACAAAGATGGTGGTTGTCAATAGAACTGAACAGAGAGTTGCTGCAATTCGTGAAGAACTAAAAGATGTTGAGATAATCTACAAACCCTTGTCTGAAATGCTCAACTGTGTTGGTGAGGCCGATGTAGTATTCACCAGTACAGCATCAGAAACCCCATTATTCTTGAGAGATCATGTTAAGGACCTTCCTCCCGTGAGTCAAGGTGTTGGAGGCCATCACCTTTTCATTGATATCTCAGTTCCACGCAATGTAGGTTCGTGTGTCTCAGATCTCGAGTCTGTGCGAGTTTACAATGTTGATGACCTTAAAGAGGTTGTAGCTGCTAATAAAGAGGATCGGTTAAGAAAAGCAAGGGAAGCTCAAGCAATCATTGGTGAAGAATCAAAACAATTTGAAGCTTGGAGGGACTCGCTGGAAACTGTTCCTACCATTAAGAAACTGAGGGCCTATGCTGAAAGAGTCAGGGTTGCTGAGTTTGAGAAATGCTTAGGTAAAATGGGTGACGATATTCCAAAGAAGACGCACAGAGCTGTTGATGATCTTAGCCGCGGCATTGTGAATAAGATGCTTCATGGTCCAATGCAACACTTAAGGTGTGATGGGAGTGACAGCAGGACTCTAACTGAGACCCTTGAAAACATGCATGCTTTGAATAGAATGTTCAGCCTTGAGACTGAAATATCTGTTTTGGAGCAGAAGGTCCGAGCCAAGGTGGAACAAAACCGTAGTGAGGCTTGA 1629 0.4365 MAVSTSFSGAKLETLLLNKCCPSSSARLNATHFSVFGKNRRTLSVIQKGGIRCDASASNVLGDSISNATTVSAIEQLKTSAADRYTKERSSIVVIGLSVHTTPVEMREKLAIPEAEWPRAIGELCGLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVSELYEHRFLLYNKDATQHIFEVSAGLESLVLGEGQILAQVRQVVKVGQGVNGFGRNISGLFKHAITVGKRVRAETNIAAGAVSVSSAAVELALMKLPETSHGSARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRTEQRVAAIREELKDVEIIYKPLSEMLNCVGEADVVFTSTASETPLFLRDHVKDLPPVSQGVGGHHLFIDISVPRNVGSCVSDLESVRVYNVDDLKEVVAANKEDRLRKAREAQAIIGEESKQFEAWRDSLETVPTIKKLRAYAERVRVAEFEKCLGKMGDDIPKKTHRAVDDLSRGIVNKMLHGPMQHLRCDGSDSRTLTETLENMHALNRMFSLETEISVLEQKVRAKVEQNRSEA 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1196 542 Pfam Glutamyl-tRNAGlu reductase, dimerisation domain 416 520 IPR015896 GO:0008883|GO:0033014|GO:0050661
Lal18g1196 542 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 250 410 IPR036291 -
Lal18g1196 542 Coils Coil 303 323 - -
Lal18g1196 542 Pfam Shikimate / quinate 5-dehydrogenase 261 402 IPR006151 -
Lal18g1196 542 Gene3D - 90 250 IPR036343 GO:0008883|GO:0033014|GO:0050661
Lal18g1196 542 PANTHER GLUTAMYL-TRNA REDUCTASE 1 539 - -
Lal18g1196 542 CDD NAD_bind_Glutamyl_tRNA_reduct 92 414 - -
Lal18g1196 542 ProSitePatterns Glutamyl-tRNA reductase signature. 188 211 IPR018214 GO:0008883
Lal18g1196 542 PANTHER GLUTAMYL-TRNA REDUCTASE 1, CHLOROPLASTIC 1 539 - -
Lal18g1196 542 SUPERFAMILY Glutamyl tRNA-reductase catalytic, N-terminal domain 91 247 IPR036343 GO:0008883|GO:0033014|GO:0050661
Lal18g1196 542 SUPERFAMILY Glutamyl tRNA-reductase dimerization domain 414 501 IPR036453 GO:0008883|GO:0033014|GO:0050661
Lal18g1196 542 Gene3D - 251 403 - -
Lal18g1196 542 Hamap Glutamyl-tRNA reductase [hemA]. 91 518 IPR000343 GO:0008883|GO:0033014|GO:0050661
Lal18g1196 542 TIGRFAM hemA: glutamyl-tRNA reductase 92 500 IPR000343 GO:0008883|GO:0033014|GO:0050661
Lal18g1196 542 Pfam Glutamyl-tRNAGlu reductase, N-terminal domain 95 245 IPR015895 GO:0008883|GO:0033014|GO:0050661
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1196 Lal-Chr18 14838530 14843641 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1196 K02492 - gmx:100815985 881.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1196 18 14838530 14843641 Lal18g1196 18 14838530 14843641 ECH