Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1193 ATGGCTTCTTTTCCTTCTGTTGCTATCACTCTAACTGCAACTCTCAAGCTCCACCCACAATTCAGAAAATACCCAACAACCTATTTTCCCATAGATAAGAGTCAAAGCCTTTCTTTGCAGAAAAACCACAGACTCACTCAATTGGATCCCAGTAATTTGGATTTTCAGGAAGCACTTTCCTTTTCAAAAGAGAGGACAGAGGATGTAGAATCATCTTTCTACTTTCCCTTGTTGCAAGAATGCTTAAAAAGAAGCTCCATTTCATATACAAAAGTTATTCATGGTCATGTCACAAAAACTGGTACCCACGAAGACGTTTTTGTGATGTCATTTCTGGTCAATATTTATGCCAAATGTGGGAACATGGAGGATGCTCGCAAAGTTTTCGATAAAATGCCGAGGAGAAACGTTGTCGCGTGGAGCACATTGTTGGTGGGTTATGTGAAGAACTCGCAGCCAAAGCATGCTATCCATGTGTTTCATGAGATGTTGTATTCAGGAAGTTACCCTTCTAATTTCGCCCTTGCCATAGCTCTAAATGCTTGTACATCTCTGCACTCTTTAAAGTTAGGGGATCAGTTCCATGCTTACATAATCAAATACCATATTGACTTTGACACCAGCATTGGCAATGCACTTTGTAGTTTATACTCCAAATCTCACAAATTAAAACTTGCTCTAAAAGCATTTAGAAGAATCAATGAAAAGAACGTTATTTCATGGACGACGGCTATTTCTGCTTGTGGTGACAACGGTGAAGCTATGAAGGGTTTGAATCTTTTTGTTGAGATGCTTTCTGAGGGCATACAGCCTAATGAGTTCACTGTAACTAGTGCCTTGAGCCAGTGTTGTGAGATTCTGTACTTAGAGCTTGGGACTCAGGTTCATTCGTTGTGTACTAAATTCGGCTACGATTCGAACCTGCGTGTTAGGAATTCTATGTTGTACTTGTACCTCAAATGTGGTTGTATTGGTGAGGCTCAAATTTTGTTTCATGGAATGGATGATCTCAGTTTGGTTAGCTGGAATGCAATGATTTCTGGGCATGCACAAATGATGGAACTCACAAAGGATAACCTTTCTTTATGCCAAAGTGGAAATGAAGCTCTCAATCTTTTCTCCAAGTTAAACCGGTCAGGCATGAAACCTGATCTATTTACCTTCTCAAGTGTCTTGAGTGTCTGCAGTAGACTGCTGGCTTTAGAGCAGGGCGAACAAATTCATGCTCAGGCCACTAAAACTGGTTTCTTGTCCGATGTGGTTGTGAGTACGTCACTAATTAACATGTACAATAAATGCGGGAGCATTGAGAGGGCAAGCAAAGCATTTCTAGAGATGTCTACTAGAACGATGATATCATGGACTTCCATGATTGCAAGTTTTGCACAGCATGGCAGGTATCAGCAAGTATTGCAGCTTTTTGAAGACATGAGACTAGCAGGAGTTAGACCAAATGCGGTCACTTTTGTGGGTGTTTTATCAGCATGTGGCCAAGCTGGCATGGTAACTGAAGCACTCGATTACTTTGAGATTATGCAAAAGGAATATAAAATTAAGCCGATGATGGACCATTATACTTGCCTGGTTGATATGTTTGTGAGGTTAGGTCAGCTAGAGGAAGCTTTCAATCTTATAAAGAAAATGGATTTTGAGCCTAGCGAATTTATTTGGTCAAACTTGATCGATGGTTGTCGAAGCCATGGGAATCTGGAATTGGGGTATCAAGCTGCTGAGCAGTTACTAAGTCTCAAACCAAAAGATTCCGAAACATATCTACTGTTGTTGAATATGTACCTCAATGCGGGGAAATTTAAAGATGTTTCTCGGGTGAAGGAGATGATGAAAGAAGAGAATGTTAGAAAGTTAAAGGATTGGAGCTGGATTAGCATCAAAGACAAAGTCTATTCATTTGAACCCAATGACAAGGCACATCCAGAAAGTTCACTACTACACAAATCTTTGGAGGATTTACTTGCCAAAGCAAAGAATATTGGATATGAAATGCTAGAAAGTGTGGAAATCAATGAGGAGGAGGAGGGGGAAAAGATATCTTCCCCGACCATTTATCACAGCGAGAAGTTGGCCATTACATGTGGATTGGAGAAGCTGCCATATTCTTCACCAGTAAGAGTTGTGAAGAGTACCTTAATGTGCAGAGATTGCCATAATTTTGTTAAGTATGTCTCAACACTGACTGGTAGAGAAATCATTGTTAAAGATAGTAGGAGGATTCACAAATTTGTTAATGGGCAATGCTCATGTGGGGATTTTGGTAGTTTTCTCTGA 2286 0.4016 MASFPSVAITLTATLKLHPQFRKYPTTYFPIDKSQSLSLQKNHRLTQLDPSNLDFQEALSFSKERTEDVESSFYFPLLQECLKRSSISYTKVIHGHVTKTGTHEDVFVMSFLVNIYAKCGNMEDARKVFDKMPRRNVVAWSTLLVGYVKNSQPKHAIHVFHEMLYSGSYPSNFALAIALNACTSLHSLKLGDQFHAYIIKYHIDFDTSIGNALCSLYSKSHKLKLALKAFRRINEKNVISWTTAISACGDNGEAMKGLNLFVEMLSEGIQPNEFTVTSALSQCCEILYLELGTQVHSLCTKFGYDSNLRVRNSMLYLYLKCGCIGEAQILFHGMDDLSLVSWNAMISGHAQMMELTKDNLSLCQSGNEALNLFSKLNRSGMKPDLFTFSSVLSVCSRLLALEQGEQIHAQATKTGFLSDVVVSTSLINMYNKCGSIERASKAFLEMSTRTMISWTSMIASFAQHGRYQQVLQLFEDMRLAGVRPNAVTFVGVLSACGQAGMVTEALDYFEIMQKEYKIKPMMDHYTCLVDMFVRLGQLEEAFNLIKKMDFEPSEFIWSNLIDGCRSHGNLELGYQAAEQLLSLKPKDSETYLLLLNMYLNAGKFKDVSRVKEMMKEENVRKLKDWSWISIKDKVYSFEPNDKAHPESSLLHKSLEDLLAKAKNIGYEMLESVEINEEEEGEKISSPTIYHSEKLAITCGLEKLPYSSPVRVVKSTLMCRDCHNFVKYVSTLTGREIIVKDSRRIHKFVNGQCSCGDFGSFL 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1193 761 Pfam PPR repeat family 236 284 IPR002885 -
Lal18g1193 761 Pfam PPR repeat family 452 496 IPR002885 -
Lal18g1193 761 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 450 484 IPR002885 -
Lal18g1193 761 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 485 515 IPR002885 -
Lal18g1193 761 Gene3D Tetratricopeptide repeat domain 502 682 IPR011990 GO:0005515
Lal18g1193 761 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 237 271 IPR002885 -
Lal18g1193 761 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 65 693 - -
Lal18g1193 761 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 105 139 IPR002885 -
Lal18g1193 761 Pfam PPR repeat 111 137 IPR002885 -
Lal18g1193 761 Pfam PPR repeat 423 447 IPR002885 -
Lal18g1193 761 Pfam PPR repeat 138 167 IPR002885 -
Lal18g1193 761 Pfam PPR repeat 312 335 IPR002885 -
Lal18g1193 761 Pfam PPR repeat 524 548 IPR002885 -
Lal18g1193 761 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 587 621 IPR002885 -
Lal18g1193 761 SUPERFAMILY TPR-like 403 594 IPR011990 GO:0005515
Lal18g1193 761 Gene3D Tetratricopeptide repeat domain 190 291 IPR011990 GO:0005515
Lal18g1193 761 Gene3D Tetratricopeptide repeat domain 37 189 IPR011990 GO:0005515
Lal18g1193 761 Gene3D Tetratricopeptide repeat domain 400 501 IPR011990 GO:0005515
Lal18g1193 761 Gene3D Tetratricopeptide repeat domain 292 399 IPR011990 GO:0005515
Lal18g1193 761 TIGRFAM PPR: pentatricopeptide repeat domain 112 138 IPR002885 -
Lal18g1193 761 TIGRFAM PPR: pentatricopeptide repeat domain 487 520 IPR002885 -
Lal18g1193 761 TIGRFAM PPR: pentatricopeptide repeat domain 138 170 IPR002885 -
Lal18g1193 761 TIGRFAM PPR: pentatricopeptide repeat domain 452 486 IPR002885 -
Lal18g1193 761 TIGRFAM PPR: pentatricopeptide repeat domain 239 273 IPR002885 -
Lal18g1193 761 Pfam E motif 567 628 IPR046848 -
Lal18g1193 761 PANTHER OS01G0913400 PROTEIN-RELATED 65 693 - -
Lal18g1193 761 Pfam DYW family of nucleic acid deaminases 678 757 IPR032867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1193 Lal-Chr18 14808630 14811608 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1193 74 757 Glycoside Hydrolase AT3G49170 36.455 2.25e-144 443
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1193 - - gmx:100781103 1133.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1193 18 14808630 14811608 Lal18g1193 18 14808630 14811608 ECH