Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1042 ATGCCAGGGTTGTTCGCGAAAACCCCATTTCAAACGGAGCCCTCCGACGGCGTCGATCACCGAACCCCACCACCGCCGGTGAAGCGAACATTCAAGAAAACGCCGGAAAATCTGATCATAGACGAGTCCTCATTGGACAACCCGGATCTGGGTCCGTTTCTTATGAAGCTAGCCCGAGAGACCATAGCAAATGGTGAAAACCCGAATAAGGCATTGGACTATGCAATTCGGGCCACAAAATCATTTGAACGGTGTTCGGGTCCGGGTTTGGATCTTGCAAAGTGTTTGCACGTTGTTGCAGCAATATACAGTAGTTTGGGGCGGTTCAAAGAAGCGGTTGAGTCATTGAACCGGTCGATTTTGTTGTTGGATATTGATGAACCCGGTTCGATGGTGAAGTTTTCTGGGTACATGCAGCTTGGGGATACTTATTCGATGATTGGGCAGTTGGATAGATCCATTTTGTGTTATGAGTCGGGTTTGAAGATACAAATGGAGGTTTTGGGTAACTCCGATCCGAGAGTTGCAGAAACTTATAGGTACTTAGCTGAAGCACATGTCCAAGCCATGCAATTTGATGAGGCAGAGAACTTTTGCAAGAAGACCCTTGAAATTCACAAGGAGCATTGCTCACCTGCTTCCCTTACAGAAGCAGCTGATAGGCGCCTTATGGCCCTTATATACGAGGCGAAGGGAGATTACGAACCTGCACTCGAACACCTTGTCCTTGCTAGCATGTCGATGATTGCCAATGGGCAAGATAATGAGGTTGCAGCTATTGATGTTAGCATAGGTGATATTTACTCATCACTCTGTCGTTTCGATGAGGCTATTTTTGCCTACCAGAAAGCACTAACAGTGTTTAAATCCACTAAGGGTGAAAGTCACAGCTCGGTAGCATTAGTGTACATTCGCCTCGCTGACCTTTACTTCAAGACTGGAAAATTACGAGAGTCAGCATCCTACTGTGAAAATGCTTTAAGGATATACAGTAAACCATTGTCTGGAACCACTGCTGGAGATATTGCAAGCGGATTGACTGAAATCTCTGCCATATATGAAGCTCTAAACGAGCCCGAGGAGGCGCTGAAGCTCTTGCAAAAGGCAGTGAAACTATTGGAGGATAGCCCTGGACAATATAGGACAGTGGCAGGAATAGAAGCACAAATGGGAGTGATATTCTACATGGTTGGGAGGTATTTGGATGCTAGGAAGTCTTTTGAGAATGCTATAACAAAGCTGAGAGCTGGTGGGGAGATGAAATCGGCATTTTTCGGAGTTGTATTGAACCAGATGGGGCTGGCATGTGTGCAACTGTATAAAATAGGAGAGGCTGCCACACATTTTGAAGAAGCAAGAGAAATGTTGGAGCAAGAGTGTGGTAGATATCACTTGGACACTCTTGGAGTGTATAGCAATCTTGCAGCAACATATGATGCTATGGGGAGAGTTGAAGATGCCATTGAGATTTTGGAGTACATACTGAAGATGAGAGAAGAACAACTTGGAACTGCAAATCCGGATGTTGATGACGAAAAGAAAAGACTGTATGAACTTCTGAGAGAAGCGGGACGAGTTCGGAATAAACAGGGAAAATCACTTGAAAATCTTATAGACTCCAACTCCTTAAAGATGAAGAATGAAGGAAAAAAGAAGTGGGGTGTGTTTGGTTTGAGAACTTAA 1683 0.448 MPGLFAKTPFQTEPSDGVDHRTPPPPVKRTFKKTPENLIIDESSLDNPDLGPFLMKLARETIANGENPNKALDYAIRATKSFERCSGPGLDLAKCLHVVAAIYSSLGRFKEAVESLNRSILLLDIDEPGSMVKFSGYMQLGDTYSMIGQLDRSILCYESGLKIQMEVLGNSDPRVAETYRYLAEAHVQAMQFDEAENFCKKTLEIHKEHCSPASLTEAADRRLMALIYEAKGDYEPALEHLVLASMSMIANGQDNEVAAIDVSIGDIYSSLCRFDEAIFAYQKALTVFKSTKGESHSSVALVYIRLADLYFKTGKLRESASYCENALRIYSKPLSGTTAGDIASGLTEISAIYEALNEPEEALKLLQKAVKLLEDSPGQYRTVAGIEAQMGVIFYMVGRYLDARKSFENAITKLRAGGEMKSAFFGVVLNQMGLACVQLYKIGEAATHFEEAREMLEQECGRYHLDTLGVYSNLAATYDAMGRVEDAIEILEYILKMREEQLGTANPDVDDEKKRLYELLREAGRVRNKQGKSLENLIDSNSLKMKNEGKKKWGVFGLRT 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1042 560 Gene3D Tetratricopeptide repeat domain 30 245 IPR011990 GO:0005515
Lal18g1042 560 Pfam MalT-like TPR region 98 241 IPR041617 -
Lal18g1042 560 SUPERFAMILY TPR-like 93 505 IPR011990 GO:0005515
Lal18g1042 560 PANTHER KINESIN LIGHT CHAIN-LIKE PROTEIN 1 560 - -
Lal18g1042 560 ProSiteProfiles TPR repeat profile. 343 376 IPR019734 GO:0005515
Lal18g1042 560 ProSiteProfiles TPR repeat profile. 176 209 IPR019734 GO:0005515
Lal18g1042 560 Gene3D Tetratricopeptide repeat domain 246 423 IPR011990 GO:0005515
Lal18g1042 560 SMART tpr_5 468 501 IPR019734 GO:0005515
Lal18g1042 560 SMART tpr_5 426 459 IPR019734 GO:0005515
Lal18g1042 560 SMART tpr_5 300 333 IPR019734 GO:0005515
Lal18g1042 560 SMART tpr_5 384 417 IPR019734 GO:0005515
Lal18g1042 560 SMART tpr_5 93 126 IPR019734 GO:0005515
Lal18g1042 560 SMART tpr_5 176 209 IPR019734 GO:0005515
Lal18g1042 560 SMART tpr_5 218 251 IPR019734 GO:0005515
Lal18g1042 560 SMART tpr_5 258 291 IPR019734 GO:0005515
Lal18g1042 560 SMART tpr_5 134 167 IPR019734 GO:0005515
Lal18g1042 560 SMART tpr_5 343 376 IPR019734 GO:0005515
Lal18g1042 560 Gene3D Tetratricopeptide repeat domain 424 537 IPR011990 GO:0005515
Lal18g1042 560 ProSiteProfiles TPR repeat profile. 258 291 IPR019734 GO:0005515
Lal18g1042 560 Pfam Tetratricopeptide repeat 428 500 - -
Lal18g1042 560 Pfam Tetratricopeptide repeat 257 331 - -
Lal18g1042 560 ProSiteProfiles TPR repeat profile. 468 501 IPR019734 GO:0005515
Lal18g1042 560 MobiDBLite consensus disorder prediction 1 32 - -
Lal18g1042 560 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 1 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1042 Lal-Chr18 13422826 13428858 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1042 99 303 Glycosyltransferase AT3G04240 23.611 8.19e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1042 - - gmx:100794697 890.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1042 18 13422826 13428858 Lal18g1042 18 13422826 13428858 ECH