Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1008 ATGGCTTCCCTTTTTCTTCCCACAACCCTCTCCGCAACCTCAAATTCCAAAATTACCCTTTCCTTCTCCTCCTCCCTCTCCTCCGCTCCCCTCCCTTTCCGCCGCTTCTCTGTTTGTAACCCTCGCCGGAGATACTCTTCCGCTATACAATCCAAGATCAGGGAAATCTTCATGCCTGCCCTCAGCTCCACCATGACTGAGGGCAAAATCGTCTCTTGGATCAAATCTGAGGGCGACGTTCTCTCCAAAGGCGAGAGCGTCGTCGTTGTTGAGTCCGACAAGGCCGATATGGATGTTGAGACATTCTACGATGGCATCCTCGCCGCCATTGTTGTCGGCGAGGGTGAAACCGCTCCCATCGGCGCCCCGATCGGTCTTCTTGCCGAGACCGAGGCGGAAGTGGCTGAGGCTAAAGCCAAGGCTGCGAAATCCAATTCACCTGCCGCCGCAGCTCCAATTCCGCAGGAAATTTCAAATCCTGCTCCGGCGATTTCTCCACCACCGTCTCCGCCGTCCAAGGCGGTTTACGATGGGCCTAGGAAAACCGTGGCGACACCCTACGCGAAGAAGCTCGCGAAGCAGCACAAGGTGAAGATTGAATCGGTGGTTGGGACTGGTCCGTTCGGGCGGATTACTGCTGCTGACGTGGAGGCTGCAGCTGGAATTAAACCTGCGGTGGAGACGAGTAATGTGGCTTCTGCACCGGTGACTTCATCTCCGACAAAGGCGGCTGCAGCTCCTCGGGCCGTTTTGGCTTCTTCACCGGCTCCAATTCCGGGTTCTAGTATTGTACCCTTCACAACAATGCAATCTGCAGTTGCAAAGAACATGGTGGAGAGTCTCTCTGTGCCTACTTTCCGTGTTGGGTATCCTGTGATCACCGATGCACTTGATGCATTCTATGAGAAGACTTTTGAGAAATTTGGAGCACACTTACCTGGAATACTACAGGTGAAACCGAAGGGGGTGACAATGACAGCAATCTTGGCGAAGGCTGCTGCTATGGCATTGGTTCAGCATCCAGTGGTATATTCCACTTGCAAAGATGGGAAGAGTTTTACATATAATAGTAACATTAACATTGCTGTAGCTGTGGCAATCAATGGTGGTTTAATTACCCCCGTTCTTCCCGATGCAGATAAGTTGGACCTATATCTTTTGTCTCAAAAATGGAAAGAGTTGGTGGACAAAGCTCGGGCTAAGCAATTGCAACCTCATGAGTATAATTCAGGTACTTTCACGCTTTCAAATTTGGGAATGTTTGGAGTTGACAGGTTTGACGCCATACTTCCTCCAGGCCAGGGTGCAATCATGGCTGTTGGAGCATCAAAGCCTACTGTCTTGGCAGATAAGGATGGATTCTTCAGTGTCAAAAATAAAATGCTGGTGAATGTAACTGCTGATCACAGAATAATCTATGGGGCTGACTTGGCTGCATTCCTTCAGACATTCTCAAAAATTGTTGAAAACCCTGAAAGCTTAACCTTATAA 1491 0.499 MASLFLPTTLSATSNSKITLSFSSSLSSAPLPFRRFSVCNPRRRYSSAIQSKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVGEGETAPIGAPIGLLAETEAEVAEAKAKAAKSNSPAAAAPIPQEISNPAPAISPPPSPPSKAVYDGPRKTVATPYAKKLAKQHKVKIESVVGTGPFGRITAADVEAAAGIKPAVETSNVASAPVTSSPTKAAAAPRAVLASSPAPIPGSSIVPFTTMQSAVAKNMVESLSVPTFRVGYPVITDALDAFYEKTFEKFGAHLPGILQVKPKGVTMTAILAKAAAMALVQHPVVYSTCKDGKSFTYNSNINIAVAVAINGGLITPVLPDADKLDLYLLSQKWKELVDKARAKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVLADKDGFFSVKNKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLTL 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1008 496 Pfam e3 binding domain 183 217 IPR004167 GO:0016746
Lal18g1008 496 CDD lipoyl_domain 55 127 - -
Lal18g1008 496 ProSiteProfiles Biotinyl/lipoyl domain profile. 53 131 IPR000089 -
Lal18g1008 496 PANTHER DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED 15 496 IPR045257 GO:0006086|GO:0045254
Lal18g1008 496 SUPERFAMILY CoA-dependent acyltransferases 251 494 - -
Lal18g1008 496 SUPERFAMILY Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 175 220 IPR036625 GO:0016746
Lal18g1008 496 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE ACETYLTRANSFERASE COMPONENT 4 OF PYRUVATE DEHYDROGENASE COMPLEX, CHLOROPLASTIC 15 496 - -
Lal18g1008 496 Gene3D - 177 221 IPR036625 GO:0016746
Lal18g1008 496 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 78 107 IPR003016 -
Lal18g1008 496 Gene3D - 257 495 IPR023213 -
Lal18g1008 496 Gene3D - 48 152 - -
Lal18g1008 496 Pfam Biotin-requiring enzyme 55 125 IPR000089 -
Lal18g1008 496 MobiDBLite consensus disorder prediction 143 179 - -
Lal18g1008 496 SUPERFAMILY Single hybrid motif 52 146 IPR011053 -
Lal18g1008 496 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 262 495 IPR001078 GO:0016746
Lal18g1008 496 ProSiteProfiles Peripheral subunit-binding (PSBD) domain profile. 183 220 IPR004167 GO:0016746
Lal18g1008 496 MobiDBLite consensus disorder prediction 159 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1008 Lal-Chr18 13082010 13087275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1008 14 496 Acyl Lipid Metabolism Gene Families AT3G25860 72.279 0.0 633
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1008 K00627 - gmx:100813087 632.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1008 18 13082010 13087275 Lal18g1008 18 13082010 13087275 ECH