Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0956 ATGTGGCCACACTTAGCCAAACGAGCTTCCCCAAGAAGAAAGTTCAAGTTACCCTCTCAATCACCTTCTTCTACTACATTTTCTCACCCTTCAATTTTTCTCCGCAAAATAATAACTACCCAGACCAAATCACATGTACCCTCGAGATACCCAGTTCTTGGTTTTGGTAAAGTCGGTGTCTTTACCACAATTAACGAACTGGGTCGATGCAATTTCTCATTTTCTAAATACCCTTTTAGTTTTTATTCGCCTTTGAATCTTACAAAATGTTATTCTAGTGTTGCAGAAGCTATTGAGTCCACTGACACAGAAGAAGAGTGTTCTGGTTCCAATGAAGTTCATAACTTGTTGGAACAAATGGCGAAAGTAGAAAAAGGAAGAGGGAAGGGAAAAGGAAAAGGAAAATCTCAATTGGAAAATGTTGGCCACAAGTACAAAATGCTTAGAAAGAGGCAGATAAAGATGGAGACAGAGGCATGGGAAGAGGCAACAAGAGAGTATCAGGAGCTGCTAGAGGACATGTGTAAGCATAAACTCGCGCCGAATTTGCCTTACATGAAGTCCTTGTTTCTTGGTTGGTTTGAGCCATTGAGAGATGCCATTGTTGCTGAGCAGGAGGTTTGTAAGGAGTGCAAGCATACAATGACACATGCTACTCATTTTAATGATTTACCTGCTGGAATGATGGCAGTGATCACTATGCATAAGTTGATGGGGTTGTTGATGAATAATAGTAATGGAGTGGGCACTACTAGAGTTATTCAAGCTGCACTTCAAATAGGTGAAACCATTGAAAATGAGGCAAGGATATATAAGTATATGGAAAAGACAAAAAAGAATAACAAGAAGAGCACAACCACTGACAAGCCTGATATTGAATTTGATCACGCAGCCATAGAAAGAGACAATCTAGCTGAAGATCAAACAAAAATGGTCAAAGATCAGAGTAAACTTAGGAAAAAAGTTTCTACCTTAATGAAAAAGCAGAAAATGCAACAAGCAATGGGGATAGTTAGTGGACAAGATGACTGGAAGCCTTGGGGACAGGAATGTCAAGTAAAGGTTGGTTCCCGCTTGATTCATCTGTTAATAGAAACAGCCTACATACAACCACCCGTCAATCAATTAGATGGTTCACCAGACATACGCCCTGCATTTAAGCACACTCTCAAAACAGTTCAAAATGATTCACAGAAGGACGTTAGGAGATATGGTGCTATTGAATGTGACCCTCTGGTACATAAAGGCCTAGAAAAGAGTGCCAGGCACATAGTCATCCCATACATGCCAATGTTGGTGCCACCTATTAACTGGACAGGATTTGACAAAGGAGCATACTTGTTTTTGCCATCTCATGTTATGAGAATACATGGGGCAAAGCAGCAACGCGAAGCAGTTAAAAGGGCTCCTAAGAGTCAACTAGAACCTGTTTATGAGGCCCTCGATACTCTTGGCTATACCAAATGGAGGATAAACAAGCGGGTGCTTAGCGTGATAGATCAACTATGGGCTAATGGTGGGCGTCTTGCTGACTTGGTCGACCGTGAAGATATTCCACTCCCCGAGGAACCAGACACAGAAGATGAAGGAGAAATCCGAAAATGGAAATGGAAAGTTAAAGCTGCCAAAAAGGAAAATAACGAGAGGCATTCACAAAGATGTGACGTAGAACTTAAACTTGCTGTTGCAAGAAAGATGAAGGATGAAGAAGGCTTCTACTACCCACACAATCTTGATTTCCGAGGACGTGCTTACCCCATGCATCCATATTTGAACCATCTTGGTTCAGATTTATGCCGAGGCATACTCGAATTTGCAGAGGGACGCCCTCTAGGAAATTCAGGCTTGCGCTGGCTGAAAGTACATCTGGCAAATTTGTACGCTGGCGGTGTGGACAAGTTATGTTATGAAGGTCGAGTAGCATTTACTGAGAACCATCTAGATGATGTATTTGATTCTGCAGACAGGCCTCTTGAGGGAAGGCGCTGGTGGTTGGAAGCAGAGGATCCTTTTCAATGCTTGGCAGCATGTATCAATCTCTCTGAAGCATTAAGAAGCCCCTCTCCTGAGACTACCGTTTCACATATGCCTGTCCACCAGGATGGTTCGTGCAATGGCTTACAACACTATGCAGCCCTCGGCAGGGATAAGTTAGGAGCTGCTGCAGTCAATCTTGTTGGTGGAGACCAGCCTGCTGATGTGTACTCAGGAATTGCTGCCAGAGTGCTTGAAATCATGAAAAGAGATGCAAAGAAAGACCCTCAAACTAATCCAAATGCTTTGCATGCTAGAAATTTGCTCAACCAGGTGGACCGTAAATTGGTGAAACAGACAGTGATGACATCAGTCTATGGTGTAACATATATTGGTGCACGCGACCAGATTAAGAAGAGGCTAAATGAGCGTTGTGCTATAGAGGATGATTCAGAGCTGTTTTCTGCTTCTTGCTATGCAGCAAAAACCACTCTTACTGCTTTGGAAGAGATGTTTGAGGCTGCAAGAAGTATCATGAGTTGGCTTGGTGACTGTGCTAAGATTAAAACTTCCCTTCAGGTATTGTCATTACAAAGAGAAACTGACAAGGTCATGGTTAAAAGACAGAGAACAGCTTTCCCTCCCAATTTTGTTCACTCTCTTGATGGTTCTCACATGATGATGACTGCTCTTGCTTGTAAAAGAGCTGGATTGAATTTTGCAGGCGTACACGATTCATATTGGACACATGCATGTGATGTGGACGAAATGAACAGGATACTTAGGGAAAAGTTTGTCGAACTCTATGAAGCTCCTATACTAGAAAATTTGTTGGAGAGCTTTGAGAAGTCTTTTGACACGTTGAAATTTCCTGCCTTACCAGAGCGGGGAGACTTTGATCTTCGAGAGGTTCTGGAGTCTCCCTATTTTTTCAACTAG 2913 0.4246 MWPHLAKRASPRRKFKLPSQSPSSTTFSHPSIFLRKIITTQTKSHVPSRYPVLGFGKVGVFTTINELGRCNFSFSKYPFSFYSPLNLTKCYSSVAEAIESTDTEEECSGSNEVHNLLEQMAKVEKGRGKGKGKGKSQLENVGHKYKMLRKRQIKMETEAWEEATREYQELLEDMCKHKLAPNLPYMKSLFLGWFEPLRDAIVAEQEVCKECKHTMTHATHFNDLPAGMMAVITMHKLMGLLMNNSNGVGTTRVIQAALQIGETIENEARIYKYMEKTKKNNKKSTTTDKPDIEFDHAAIERDNLAEDQTKMVKDQSKLRKKVSTLMKKQKMQQAMGIVSGQDDWKPWGQECQVKVGSRLIHLLIETAYIQPPVNQLDGSPDIRPAFKHTLKTVQNDSQKDVRRYGAIECDPLVHKGLEKSARHIVIPYMPMLVPPINWTGFDKGAYLFLPSHVMRIHGAKQQREAVKRAPKSQLEPVYEALDTLGYTKWRINKRVLSVIDQLWANGGRLADLVDREDIPLPEEPDTEDEGEIRKWKWKVKAAKKENNERHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGNSGLRWLKVHLANLYAGGVDKLCYEGRVAFTENHLDDVFDSADRPLEGRRWWLEAEDPFQCLAACINLSEALRSPSPETTVSHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVGGDQPADVYSGIAARVLEIMKRDAKKDPQTNPNALHARNLLNQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLNERCAIEDDSELFSASCYAAKTTLTALEEMFEAARSIMSWLGDCAKIKTSLQVLSLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTALACKRAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYEAPILENLLESFEKSFDTLKFPALPERGDFDLREVLESPYFFN 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0956 970 Pfam DNA-directed RNA polymerase N-terminal 151 485 IPR029262 -
Lal18g0956 970 Gene3D - 609 687 - -
Lal18g0956 970 SMART RPOL_N_2 150 486 IPR029262 -
Lal18g0956 970 Gene3D - 849 959 - -
Lal18g0956 970 ProSitePatterns Bacteriophage-type RNA polymerase family active site signature 2. 770 784 IPR002092 GO:0003677|GO:0003899|GO:0006351
Lal18g0956 970 PANTHER DNA-DIRECTED RNA POLYMERASE 846 970 - -
Lal18g0956 970 PANTHER DNA-DIRECTED RNA POLYMERASE 1 846 - -
Lal18g0956 970 Gene3D - 718 848 - -
Lal18g0956 970 Pfam DNA-dependent RNA polymerase 845 970 IPR002092 GO:0003677|GO:0003899|GO:0006351
Lal18g0956 970 Pfam DNA-dependent RNA polymerase 609 849 IPR002092 GO:0003677|GO:0003899|GO:0006351
Lal18g0956 970 ProSitePatterns Bacteriophage-type RNA polymerase family active site signature 1. 697 708 IPR002092 GO:0003677|GO:0003899|GO:0006351
Lal18g0956 970 Gene3D - 132 485 IPR037159 -
Lal18g0956 970 SUPERFAMILY DNA/RNA polymerases 142 970 IPR043502 -
Lal18g0956 970 MobiDBLite consensus disorder prediction 1 27 - -
Lal18g0956 970 Coils Coil 153 173 - -
Lal18g0956 970 PANTHER DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL 1 846 IPR002092 GO:0003677|GO:0003899|GO:0006351
Lal18g0956 970 PANTHER DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL 846 970 IPR002092 GO:0003677|GO:0003899|GO:0006351
Lal18g0956 970 Gene3D - 487 569 IPR024075 GO:0003899
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0956 Lal-Chr18 12438926 12450465 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0956 K10908 - gmx:100814762 1412.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0956 18 12438926 12450465 Lal18g0956 18 12438926 12450465 ECH