Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0902 ATGAGTGAGGTTTTCGAAGGGTACGAACGCCAGTACTGCGACCTCTCTGCTAATCTCTCTCGTAAATGCAGTTCTACATCCCATGATATTAACCTAGAACAGAAGCAGCAAAAAATTTCTGAGATCAAAGCTGGACTAGATGATGCTGATGTTCTGATTAGGAAGATGGACCTCGAGGCAAGAAGTTTGCAGCCAAGTGTAAAAGCAATGCTGCTTGCAAAGTTGAGGGAATACAAATCCGATCTGAACAACTTGAAAAAAGAATTTAAAAGGTTAACATCACCTACTGCAGATCAGGCTGCCCGTGAAGATTTGTTGAATACTGGAAGGGCAGATGCACATTTGGCATCTGCTGATCAGAGAGAAAGATTAGCTATGTCAGTGGAGAGAATAAATGAGTCGAGCGATCGAATCAGGGAAAGCCGAAGAACCATTCTAGAGACCGAAGAACTTGGTGTCTCAATCCTCCAAGATTTACACCAGCAGCGTGAAACACTCCTGAACTCTCATAAAAAGCTTCATGGGATAGATGATGCTATTGACAAGAGTAAAAAGGTTTTAACTACCATGTCAAGAAGAATAACTAGAAACAAATGGATCATTGGAGCTGTGATTGGAGCTCTTCTTCTTGCTATAGTTATTATTCTGTTTTACAAACTATCTCATTAG 669 0.4081 MSEVFEGYERQYCDLSANLSRKCSSTSHDINLEQKQQKISEIKAGLDDADVLIRKMDLEARSLQPSVKAMLLAKLREYKSDLNNLKKEFKRLTSPTADQAAREDLLNTGRADAHLASADQRERLAMSVERINESSDRIRESRRTILETEELGVSILQDLHQQRETLLNSHKKLHGIDDAIDKSKKVLTTMSRRITRNKWIIGAVIGALLLAIVIILFYKLSH 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0902 222 SUPERFAMILY SNARE fusion complex 131 190 - -
Lal18g0902 222 CDD SNARE_Vti1 128 189 - -
Lal18g0902 222 Pfam Vesicle transport v-SNARE protein N-terminus 12 91 IPR007705 GO:0006886|GO:0016020
Lal18g0902 222 SUPERFAMILY t-snare proteins 6 94 IPR010989 GO:0016020|GO:0016192
Lal18g0902 222 Coils Coil 68 88 - -
Lal18g0902 222 Gene3D - 1 100 IPR038407 -
Lal18g0902 222 PANTHER VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED 1 221 - -
Lal18g0902 222 Gene3D - 118 198 - -
Lal18g0902 222 PANTHER VESICLE TRANSPORT V-SNARE 12 1 221 - -
Lal18g0902 222 PIRSF Membrin-2 1 221 IPR027027 GO:0005484|GO:0005794|GO:0016192
Lal18g0902 222 Pfam Snare region anchored in the vesicle membrane C-terminus 129 193 - -
Lal18g0902 222 SMART tSNARE_6 123 190 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0902 Lal-Chr18 11700843 11706659 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0902 K08493 - gmx:100500007 355.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0902 18 11700843 11706659 Lal18g0902 18 11700843 11706659 ECH