Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0434 ATGATGTTGAACGGAGATAATCAAAACCTTTCTGAAAGCGAGATCGAGAGAGAAGCAAAGAACTCGCTCCTTGATGTGTATGCTTCGTGTGGGTATGTCACAACATTGTGTAAACAACTGTTTGATGAAATGCCTAAGAGAGATGTTGTGTCGTGGACTGTGTTGATTATGGGGTTTAAGAATGTTGGGAGGTGTGATGATGCTTTGCTTGTGTTTGAACAGATGCAATATGTGGGCGTGGTGCCGAACCAGGTGACAATGGTGAATGCGCTGGCTGCTTGTGCTAAATTTGGTGCTATTGAAATGGGAATTTGGATACATGATATGATAAGGAGGAATGGGTGGGAATTGGATGTTAGACTCGGGACTGCATTGATTGACATGTATTCAAAATGTGGAAGAGTTGAAGAGGGGTTGAGTGTTTTCAAAAGCATGAAGGAAAAAAATGTGTTTACTTGGAATGCAGTTATTAAAGGGCTTGCTTTAGCTAAGAGTGGGATAGCGGCAATTTACTGGTTTAACAGAATGGAGCAGGATGGAATTAAGGCAGATGAAGTGACTTTGATTGCAGTTCTTTCAGCATGCAGTCACTCAGGTTTGGTTGACATGGGTAGAAAGATCTTTGGATTCTTGAGTAATCAGAAGTATGGATTTCATCCTAATGCCAAACACTATGCATGTATTGTTGATCTGTTTGCACGATCTGGATGTTTGCAAGAGGCTATCGAGTTAATGAAATGTATGCCTTTTGAACCGACGAAGGCTATGTGGGGATCCTTATTGGTTGGTTCAAAATCTCAGGGTGACTTGGAATTCAGCGAGTTTGCAGCCAAGAAACTAGTTGAATTGGAGCCAGATAACACTGCCTATTATATTCATCTGTCGAATCTGTATGCAGAGATGGGAAGATGGAGCGATGTTGAGAAAGTGAGGAAAATGATGAAAGATAGAAAACTAACAAAGGACTTGGGTTTTAGTTTTCTGGAGGTTGAACAAGGAGGGAATGTTAGAGAACTTTTGGCATAG 1026 0.4113 MMLNGDNQNLSESEIEREAKNSLLDVYASCGYVTTLCKQLFDEMPKRDVVSWTVLIMGFKNVGRCDDALLVFEQMQYVGVVPNQVTMVNALAACAKFGAIEMGIWIHDMIRRNGWELDVRLGTALIDMYSKCGRVEEGLSVFKSMKEKNVFTWNAVIKGLALAKSGIAAIYWFNRMEQDGIKADEVTLIAVLSACSHSGLVDMGRKIFGFLSNQKYGFHPNAKHYACIVDLFARSGCLQEAIELMKCMPFEPTKAMWGSLLVGSKSQGDLEFSEFAAKKLVELEPDNTAYYIHLSNLYAEMGRWSDVEKVRKMMKDRKLTKDLGFSFLEVEQGGNVRELLA 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0434 341 Pfam E motif 269 328 IPR046848 -
Lal18g0434 341 TIGRFAM PPR: pentatricopeptide repeat domain 151 185 IPR002885 -
Lal18g0434 341 TIGRFAM PPR: pentatricopeptide repeat domain 123 149 IPR002885 -
Lal18g0434 341 TIGRFAM PPR: pentatricopeptide repeat domain 50 83 IPR002885 -
Lal18g0434 341 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 118 152 IPR002885 -
Lal18g0434 341 PANTHER - 20 331 - -
Lal18g0434 341 Gene3D Tetratricopeptide repeat domain 101 213 IPR011990 GO:0005515
Lal18g0434 341 Gene3D Tetratricopeptide repeat domain 214 326 IPR011990 GO:0005515
Lal18g0434 341 Pfam PPR repeat family 47 95 IPR002885 -
Lal18g0434 341 Pfam PPR repeat 225 248 IPR002885 -
Lal18g0434 341 Pfam PPR repeat 123 150 IPR002885 -
Lal18g0434 341 Pfam PPR repeat 151 181 IPR002885 -
Lal18g0434 341 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 20 331 - -
Lal18g0434 341 Gene3D Tetratricopeptide repeat domain 14 100 IPR011990 GO:0005515
Lal18g0434 341 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 48 82 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0434 Lal-Chr18 3618517 3621980 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0434 38 330 Glycoside Hydrolase AT3G49170 33.447 2.76e-55 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0434 - - lja:Lj1g3v4912160.1 509.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0434 18 3618517 3621980 Lal18g0434 18 3618517 3621980 ECH