Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0424 ATGATGGAGTCGTGTGATTGTATTGATACACCATATCCACCAGATGAACTTCTAATCAAGTATCAATATATCTCAGATGTCCTGATTGCCCTTGCATATTTCTCAATTCCTGTAGAACTCATCTATTTTGTTCAGAAGTCAGCTTTCTTTCCATATAGATGGGTCCTTATGCAGTTTGGTGCTTTTATTGTCCTTTGCGGAGCAACACATTTCATAAACTTGTGGACATTCTCTATGCACTCCAAATCTGTTGCTGTGGTAATGACAATTGCCAAGGTTTCATGTGCTATTGTGTCGTGCGCGACCGCATTGATGCTTGTACACATCATTCCTGACCTCTTGAGTGTCAAAACTCGTGAATTGTTCCTTAAGAACAAGGCTGAGGAGCTTGATCGAGAGATGGGGCTTATTCTTACTCAAGAAGAAACCGGACGACATGTTAGGATGTTGACTCATGAAATTAGGAGCACACTTGACTGGCATACCATTCTTAAGACTACTCTTGTTGAGCTGGGTAGGACTTTAGGTTTGGAGGAATGTGCATTATGGATGCCATCAAGAAGTGGATTGAATCTGCAACTTTCACATACTTTAACTTGCCATGTTCAAGTTGGGTCTACTGTGCCAAATAACCTTCCTATTGTTAATGAAGTTTTTAGTAGCCCTCGAGCTATGCGGATACCACACACCTGTCCACTAGCCAGGATCAGGCCTCTTGTTGGGAGATATGTGTTGCCAGAAGTTGTTGCTGTTAGGGTGCCTCTTCTGCATCTCTCAAATTTCCAAATTAATGATTGGCCTGATCTTTCAGCAAAAAGCTATGCAATTATGGTTCTTATACTCCCTACAGATAGTGCTAGAAAATGGAGAGACCATGAGTTGGAACTTGTTGAAGTTGTTGCAGATCAGGTTGGCCCACTTGGTAAGGAATTGAGCATAGCCCACAAGGTTGTGAGTTCAAATCCAGCTGCGGTAGCTGTTGCCCTTTCACATGCTGCTATTTTGGAGGAGTCTATGCGAGCCCGTGATCAACTCGTGGAGCAGAATGTTGCTTTAGATTTAGCTCGGCAAGAGGCAGAGATGGCAATTCATGCTCGCAATGATTTCCTTTCTGTAATGAATCATGAAATGAGGACGCCAATGCATGCAATTATAGCATTGTCATCAATTCTCTTGGAAACTGAACTGACTCCAGAGCAGAGGGTTATGATAGAGACAGTGTTGAAGAGTAGTAATGTTTTGGAAACGCTTATCAATGACGTTCTAGATCTTTCTCGACTGGAAGATGGTAGCCTTGAATTAGAGATGGGAAAACTTAACCTTCATGGTGTTTTGGGAGAGGTAATTGCTGTAGTCAATCTGATAAAGCCTATAGCATCCGTGAAAAAATTACCTATTACTTTAATTCTATCCCCTGATCTGCCGGTGTTTGCCATTGGCGATGAAAAACGGCTTTTGCAAACGCTTTTAAATGTTGTAGGTAATGCTGTTAAATTCACTAAGGAGGGCTATGTTTCTATAAGAGCATCAGTTGCCAAACCAGAATCTCTACAGGATTGGCGACCTCCTGAGTTTTATCCAGCATCAAGTGATGGCAATTTCTACATGCGAGTACAGGTTAAGGATTCTGGATGTGGCGTTCTCCCACAAGATATTCCACATATCTTTACCAAGTTTGCTCAGTCTCGGAGTGTATTGGCTCGACCCAGCAGCGGTGCAGGCCTTGGGCTTGCAATTTGTAAAAGATTTGTAAATCTCATGGGAGGTCACATATGGATTGAGAGTGAGGGGCTTGATAAAGGAAGCACAGTTACATTCATAATCAAATTTGGGAATAGTGGCAATACAGATTCATCAGATAATAATGATGCAAACATAGGCCAAGCATATAGTGGAAGTGGAGGCCTAGCTAGATATAAACTATTTGTCCAAGATGGTGACAACACAGGTTTGTCTACTTGA 1962 0.42 MMESCDCIDTPYPPDELLIKYQYISDVLIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGAFIVLCGATHFINLWTFSMHSKSVAVVMTIAKVSCAIVSCATALMLVHIIPDLLSVKTRELFLKNKAEELDREMGLILTQEETGRHVRMLTHEIRSTLDWHTILKTTLVELGRTLGLEECALWMPSRSGLNLQLSHTLTCHVQVGSTVPNNLPIVNEVFSSPRAMRIPHTCPLARIRPLVGRYVLPEVVAVRVPLLHLSNFQINDWPDLSAKSYAIMVLILPTDSARKWRDHELELVEVVADQVGPLGKELSIAHKVVSSNPAAVAVALSHAAILEESMRARDQLVEQNVALDLARQEAEMAIHARNDFLSVMNHEMRTPMHAIIALSSILLETELTPEQRVMIETVLKSSNVLETLINDVLDLSRLEDGSLELEMGKLNLHGVLGEVIAVVNLIKPIASVKKLPITLILSPDLPVFAIGDEKRLLQTLLNVVGNAVKFTKEGYVSIRASVAKPESLQDWRPPEFYPASSDGNFYMRVQVKDSGCGVLPQDIPHIFTKFAQSRSVLARPSSGAGLGLAICKRFVNLMGGHIWIESEGLDKGSTVTFIIKFGNSGNTDSSDNNDANIGQAYSGSGGLARYKLFVQDGDNTGLST 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0424 653 CDD HisKA 363 426 IPR003661 GO:0000155|GO:0007165
Lal18g0424 653 Pfam GAF domain 159 305 IPR003018 GO:0005515
Lal18g0424 653 Pfam His Kinase A (phospho-acceptor) domain 366 430 IPR003661 GO:0000155|GO:0007165
Lal18g0424 653 Gene3D - 430 614 IPR036890 -
Lal18g0424 653 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 419 610 IPR036890 -
Lal18g0424 653 CDD HATPase_EvgS-ArcB-TorS-like 485 610 - -
Lal18g0424 653 SMART HisKA_10 365 430 IPR003661 GO:0000155|GO:0007165
Lal18g0424 653 PANTHER ETHYLENE RESPONSE SENSOR 1 323 645 - -
Lal18g0424 653 PANTHER ETHYLENE RESPONSE SENSOR 1 2 305 - -
Lal18g0424 653 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 351 431 IPR036097 GO:0000155|GO:0007165
Lal18g0424 653 ProSiteProfiles Histidine kinase domain profile. 372 612 IPR005467 -
Lal18g0424 653 Gene3D - 328 429 - -
Lal18g0424 653 Gene3D - 139 307 IPR029016 -
Lal18g0424 653 PRINTS Bacterial sensor protein C-terminal signature 536 550 IPR004358 GO:0016310|GO:0016772
Lal18g0424 653 PRINTS Bacterial sensor protein C-terminal signature 554 564 IPR004358 GO:0016310|GO:0016772
Lal18g0424 653 PRINTS Bacterial sensor protein C-terminal signature 571 589 IPR004358 GO:0016310|GO:0016772
Lal18g0424 653 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 2 305 - -
Lal18g0424 653 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 323 645 - -
Lal18g0424 653 SMART HKATPase_4 480 612 IPR003594 -
Lal18g0424 653 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 480 610 IPR003594 -
Lal18g0424 653 SMART gaf_1 159 321 IPR003018 GO:0005515
Lal18g0424 653 SUPERFAMILY GAF domain-like 162 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0424 Lal-Chr18 3560801 3569624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0424 2 624 Miscellaneous Gene Families AT2G40940 73.676 0.0 906
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0424 K14509 - gmx:100802569 1102.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0424 18 3560801 3569624 Lal18g0424 18 3560801 3569624 ECH