Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0421 ATGGTTATGAAAACAACATCATCTTCTTCTTCATCTCCTGTTACCATAATGATATCTTCTGGAGGAGGAAGCCGAGTCACGGGACTAGTTAACAGTACTAGTCCTGTGCCACACGCTTCCTTCTCCAACGATAGCCATAATTCTCCTCTTCGGAGGAGAGTATCGGGTGGTGGTAACAACAATTGTTACAATTCTTCTATGTCTAGAGAAGACATATCAACAACAACAACAATGGAAGAAGAATTCAATTCAGAATATGTATCATACACTGTTCACATTCCTCCTACCCCAGATCGCCAACCATTATCAACTTCTCAAACAAGCATCAATGAAGAAGATTTCAAGAACAACAATGGCAGCAAAAACTACATCTCAGGCACAATTTTTACTGGTGGTTTCAACTCGGTGACTCGAGGCCATGTGATTGAATGCTGCTCGATTGAGCGCGACGAGGAGCAGTTGAAATCGGTGCTTGTTTGTGGAATGAAAGGGTGTGATGAGGCTGCAATTGAAGGAGGAAAATCAAGTTGTGTTTGTGAATGTGGGTTCAAGATTTGCAGGGATTGTTACTTGGAACTTTGTGGTGGGAAAAATAGCAATGGAAGGTGTCCTGGTTGCAAAGAACCTTACAATTATGCAAGCGATGATGACGATGATGATGATGAAGAGCGAAATTCCGAGGACGGAGATAAGGCCTTGCCATTACCTTCAATGGCTGAGTTCAAATTGGATAAGAGGCTTTCAGTTGTGAAGTCATTTAAGGCACAAAATCATACACCTGATTTTGATCACACTCGATGGCTATTTGAAACCAAGGGTACTTATGGCTATGGAAATGCAGTGTGGCCTAAAGATGGATATGGTTTTGGATCTGATGCTAATGGATTCGAACACCCTCCGGATTTCGGAGAGAAAGCTAGGAGACCCTTGACTAGAAAGGTTGGAGTTTCAGCTGCAATTATCAGTCCATATAGGTTACTTATTTTGATGCGCCTTGTCGCATTGGGATTATTTCTTACATGGAGAATTAGACACCCGAATCGCGAAGCAATGTGGCTGTGGGGAATGTCCATAACTTGTGAACTATGGTTTGCATTTTCATGGCTACTTGATCAGCTCCCTAAGCTCTGCCCTGTAAATAGAGTCACTGATCTCTCTGTTCTGAAAGAGAGGTTTGAGTCTCCGAACCTTCGCAACCCGAAAGGAAGGTCAGATCTCCCAGGAATTGATGTTTTTGTTTCCACAGCAGACCCTGAAAAGGAGCCTCCCCTTGTTACTGCAAACACAATTCTTTCGATCCTTGCAGTCGATTATCCAGTGGAGAAGGTTGCATGTTACTTGTCTGATGATGGTGGAGCACTGTTGACATTTGAAGCTCTTGCTGAGACTGCTAGTTTTGCAAGAGTATGGGTTCCTTTCTGTAGAAAGCACCAAATAGAGCCTAGAAATCCTGAAGCATATTTTGGGCAGAAGCGCGATTTTCTCAAGAACAAGGTTCGGTTAGACTTCGTGAGGGAAAGGAGAAGGGTGAAGAGGGAATATGATGAATTCAAAGTGAGGGTGAATTCCTTACCTGAATCCATAAGGAGAAGATCTGATGCTTACAATGCTCATGAAGAGTTAAGAGCTAAGAAGAAACAGATGGAAAATGGCTCCAATATCTCCGAACCCATTAAGGTTCCTAAAGCAACATGGATGTCTGATGGTTCTCATTGGCCTGGAACTTGGGCATCGGCAGAACCAGACCACTCCAGAGGAGATCATGCTGGCATTATTCAGGCAATGTTAGCTCCCCCAAATGTGGAGCCTGAATTTGGTGTAGAAGTTGATGCAGAGAACTTGATTGACACAACAGATGTTGATGTTCGATTACCGATGCTTGTTTATGTGTCTCGAGAGAAGAGGCCCGGATATGATCATAACAAGAAAGCAGGAGCAATGAATGCTCTTGTTCGCACAAGTGCCATCATGTCCAATGGGCCATTCATTCTGAATCTTGACTGCGATCATTACATCTACAACTCCTTAGCTATGAGGGAAGGTATGTGCTTTATGCTTGACCGGGGCGGTGATAGAATATGTTATGTTCAGTTCCCCCAAAGGTTTGAAGGCATTGACCCCAGCGATCGATATGCAAACCACAATACAGTGTTCTTTGATGTGAGCATGAGAGCTCTTGATGGCTTACAAGGCCCAATGTATGTTGGAACTGGTTGCATATTCAGAAGAACGGCTCTTTATGGGTTTAGTCCTCCTAGAGCTACAGAACACCATGGTTGGTTCGGAAGGAAGAAAATTAAGTTGTTTTTGAGACGGCCTAATGTGTCAAAGAAGCAAGAAGATGAAGTAGTTGTGCCAATCAATGGTGATCACAATGATGATGATGCTGACATTGAGTCTTTACTTCTTCCGAAAAGGTTTGGGAATTCTACTTCTCTAGCTGCATCCATTCCAGTAGCAGAATATCAGGGAAGGTTGCTTCAAGATTTGAAAGGAAATGGAACACAAGGAAGGCCTGCAGGTTCTCTTGCTGTTCCTAGAGAACCATTAGATGCCTCTACTGTTGCAGAGGCAATAAGTGTCATATCTTGTTTCTATGAGGATAAAACTGAGTGGGGCAAAAGAGTAGGATGGATATATGGTTCTGTTACTGAAGATGTAGTGACTGGTTACAGGATGCACAATAGAGGGTGGAGATCTGTGTATTGTGTGACCAAAAGGGATGCTTTTAGAGGAACAGCTCCAATAAATTTGACAGACAGGCTCCACCAAGTGCTTCGGTGGGCGACCGGATCCGTTGAGATCTTCTTCTCAAGGAACAATGCATTATTGGCTAGTCCTAGAATGAAGTTCTTGCAGAGGGTAGCATACTTCAATGTAGGAATGTACCCTTTCACTTCAATGTTTTTGATTGTGTATTGCTTTCTGCCTGCAGTGTCCTTAATTTCAGGGCAGTTTATAGTCTCAACTCTCAGTGCTACTTTTCTAGTGTTCTTGCTAGGCATTACAATCACACTTTGTTTGCTTGCATTGCTTGAGATCAAGTGGTCAGGAATCACATTACACGACTGGTGGCGAAACGAGCAATTCTGGTTAATCGGTGGAACAAGTGCCCATCCAGCTGCTGTTTTACAAGGATTGTTGAAGGTCATAGCTGGAGTAGACATCTCATTCACCCTTACATCAAAGTCATCGACTCCAGAAGACGGAGACGACGAATTCGCAGATCTTTATGTAGTAAAATGGAGCTTCCTAATGATGCCTCCAATTATAATTATGATGGTTAACATGATTGCCATTGCTGTTGGTGTAGCAAGGACATTGTATAGCCCATTTCCACAATGGAGCAAGCTAGTAGGAGGTGTGTTCTTCAGTTTTTGGGTTCTATGCCATCTTTTCCCTTTTGCAAAAGGGTTGATGGGAAGGAGAGGAAAGGTTCCAACCATAGTTTATGTTTGGTCTGGTTTGCTCTCAATTATTATCTCTTTGCTTTGGGTCTATATATGCCCTCCTTCTGGAACACAACATGATTACATGAATTTCCAGTTCCCTTAA 3555 0.4298 MVMKTTSSSSSSPVTIMISSGGGSRVTGLVNSTSPVPHASFSNDSHNSPLRRRVSGGGNNNCYNSSMSREDISTTTTMEEEFNSEYVSYTVHIPPTPDRQPLSTSQTSINEEDFKNNNGSKNYISGTIFTGGFNSVTRGHVIECCSIERDEEQLKSVLVCGMKGCDEAAIEGGKSSCVCECGFKICRDCYLELCGGKNSNGRCPGCKEPYNYASDDDDDDDEERNSEDGDKALPLPSMAEFKLDKRLSVVKSFKAQNHTPDFDHTRWLFETKGTYGYGNAVWPKDGYGFGSDANGFEHPPDFGEKARRPLTRKVGVSAAIISPYRLLILMRLVALGLFLTWRIRHPNREAMWLWGMSITCELWFAFSWLLDQLPKLCPVNRVTDLSVLKERFESPNLRNPKGRSDLPGIDVFVSTADPEKEPPLVTANTILSILAVDYPVEKVACYLSDDGGALLTFEALAETASFARVWVPFCRKHQIEPRNPEAYFGQKRDFLKNKVRLDFVRERRRVKREYDEFKVRVNSLPESIRRRSDAYNAHEELRAKKKQMENGSNISEPIKVPKATWMSDGSHWPGTWASAEPDHSRGDHAGIIQAMLAPPNVEPEFGVEVDAENLIDTTDVDVRLPMLVYVSREKRPGYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLAMREGMCFMLDRGGDRICYVQFPQRFEGIDPSDRYANHNTVFFDVSMRALDGLQGPMYVGTGCIFRRTALYGFSPPRATEHHGWFGRKKIKLFLRRPNVSKKQEDEVVVPINGDHNDDDADIESLLLPKRFGNSTSLAASIPVAEYQGRLLQDLKGNGTQGRPAGSLAVPREPLDASTVAEAISVISCFYEDKTEWGKRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASPRMKFLQRVAYFNVGMYPFTSMFLIVYCFLPAVSLISGQFIVSTLSATFLVFLLGITITLCLLALLEIKWSGITLHDWWRNEQFWLIGGTSAHPAAVLQGLLKVIAGVDISFTLTSKSSTPEDGDDEFADLYVVKWSFLMMPPIIIMMVNMIAIAVGVARTLYSPFPQWSKLVGGVFFSFWVLCHLFPFAKGLMGRRGKVPTIVYVWSGLLSIIISLLWVYICPPSGTQHDYMNFQFP 1184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0421 1184 Pfam RING/Ubox like zinc-binding domain 163 211 - -
Lal18g0421 1184 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN D3 108 1177 - -
Lal18g0421 1184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 221 IPR013083 -
Lal18g0421 1184 Pfam Cellulose synthase 409 1175 IPR005150 GO:0016020|GO:0016760|GO:0030244
Lal18g0421 1184 MobiDBLite consensus disorder prediction 214 234 - -
Lal18g0421 1184 MobiDBLite consensus disorder prediction 26 70 - -
Lal18g0421 1184 SUPERFAMILY Nucleotide-diphospho-sugar transferases 424 978 IPR029044 -
Lal18g0421 1184 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 611 761 IPR029044 -
Lal18g0421 1184 SUPERFAMILY RING/U-box 157 213 - -
Lal18g0421 1184 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 108 1177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0421 Lal-Chr18 3544625 3549960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0421 68 1184 Glycosyltransferase AT3G03050 67.759 0.0 1550
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0421 K00770 - gmx:100804687 2018.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0421 18 3544625 3549960 Lal18g0421 18 3544625 3549960 ECH