Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0145 ATGTACCGATTCGCATCTAAATTAGCTTCCTCTGTTATTTCTTTCACCTCTAAGAACCTTATATTTAATGGGGTTATTTCAAAAAGAAGCTATGTGACCAAAGATATCAACTTTGGTGTTGGGGCTCGTGCTGCTATACTTCAGGGTGTTTCTGAGGTTGCTGAAGCTGTTAAAGTTACTATGGGACCCAAGGGTCGCAATGTGATTATTGAGAAAAGTCATGGTAATCCTAGGGTGACAAAGGATGGTGTCACAGTTGCCAAGAGTATCAATTTTAAAGACAAAGCAAAAAATGTTGGCGCAGAACTTGTCAAGCAGGTGGCAAAGGCGACCAATACTGCTGCTGGAGATGGTACAACTTGTGCAACTGTTTTAACTCAGGCAATACTCACAGAAGGATGCAAATCAGTTGCTGCGGGTGTAAATGTCATGGATTTGCGTAGTGGTATAAATAAGGCAGTCGATGCTGTAATTACTGATTTGAAAAACAGAGCATTAATGATAAGTACACCGGAAGAGATAACCCAGGTTGGAACTATATCTGCAAATGGAGAGCGTGATATTGGAGAATTGATAGCAAGAGCAATGGAGAAAGTTGGGAAGGAAGGAGTCATTACCGTTGCTGATGGGAACACTTTGGATAACGAGTTGGAAGTGGTAGAAGGAATGAAGTTAACCAGAGGCTACATCTCTCCTTATTTTATTACTGATCAAAAGACCCAAAAATGTGAATTGGAGAATCCCTTTATCCTCATCCATGACAAGAAAATTTCGGGCATGAATTCGCTGTTGAAAATATTGGAGCTGGCAGTGACGAATCGAAGACCACTCCTAGTTGTTGCAGAAGATGTTGACAGTGATGCATTGGCCTTGCTCATACTGAACAAGCATCAAGCTGGGCTTAAGGTTTGTGCTATAAAAGCTCCTGGTTTTGGGGATAGTAGAAGAGCAAGCTTAGACGATCTTGCAGTTCTTACTGGAGGAGAGGTCATCACTGAAGATCGTGGTTTGACTCTTGACAAGGTCCAACCAGAAATGCTTGGAACTGCAAAAAAGGTTACTGTTTCCATTGATGACTCTATCATTCTACATGGTGGTGGGGATAAGAAACTCATTGAAGAGAGATGTGAGCAGCTGAGGTTGGCTATGGATAAGAGTTCTGCCACATTTGATAAAGAAAAAGCACAGGAGCGGCTATCAAAACTATCTGGTGGTGTAGCTGTTTTCAAGGTTGGAGGGGCTAGTGAGGCAGAAGTTGGGGAAAGGAAAGATAGGGTGACAGATGCTTTAAATGCCACTAGAGCAGCTGTGGAAGAGGGAATTGTTCCAGGTGGTGGAGTTGCTCTATTATATGCTAGCAAAGTCTTGGAGAACCTTCAAACTCAAAATGCTGATGAGAAAAGAGGAGTGCAGATTATTCAGAATGCACTTAAGGCACCTACATTTACAATAGCTTCAAATGCTGGTTTTGATGGTACTTTGGTTCACAGCAAATTGTTGGAACAAGACAATCATAATTTGGGTTTTGATGCTGCTAATGGTGTCTATGTTGATATGGTAAAGGCTGGAATTATAGATCCACTTAAAGTTGTTAGATCAGCTTTGGTAGATGCTGCCAGTGTCTCATTGCTACTGACAACAACTGAAGCAGCTGTAGTAGAGAATGTGAATGACAAAAATAAACCTCCAAGCAGGGTGCCAGATATGGATGATTTGGGTTACTAA 1725 0.4162 MYRFASKLASSVISFTSKNLIFNGVISKRSYVTKDINFGVGARAAILQGVSEVAEAVKVTMGPKGRNVIIEKSHGNPRVTKDGVTVAKSINFKDKAKNVGAELVKQVAKATNTAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGINKAVDAVITDLKNRALMISTPEEITQVGTISANGERDIGELIARAMEKVGKEGVITVADGNTLDNELEVVEGMKLTRGYISPYFITDQKTQKCELENPFILIHDKKISGMNSLLKILELAVTNRRPLLVVAEDVDSDALALLILNKHQAGLKVCAIKAPGFGDSRRASLDDLAVLTGGEVITEDRGLTLDKVQPEMLGTAKKVTVSIDDSIILHGGGDKKLIEERCEQLRLAMDKSSATFDKEKAQERLSKLSGGVAVFKVGGASEAEVGERKDRVTDALNATRAAVEEGIVPGGGVALLYASKVLENLQTQNADEKRGVQIIQNALKAPTFTIASNAGFDGTLVHSKLLEQDNHNLGFDAANGVYVDMVKAGIIDPLKVVRSALVDAASVSLLLTTTEAAVVENVNDKNKPPSRVPDMDDLGY 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0145 574 Pfam TCP-1/cpn60 chaperonin family 53 553 IPR002423 GO:0005524
Lal18g0145 574 Gene3D GroEL 222 403 IPR027409 -
Lal18g0145 574 SUPERFAMILY GroEL-intermediate domain like 168 234 IPR027410 -
Lal18g0145 574 SUPERFAMILY GroEL equatorial domain-like 37 552 IPR027413 -
Lal18g0145 574 SUPERFAMILY GroEL apical domain-like 214 406 IPR027409 -
Lal18g0145 574 Hamap Chaperonin GroEL [groEL]. 32 574 IPR001844 GO:0042026|GO:0140662
Lal18g0145 574 Gene3D - 167 440 IPR027410 -
Lal18g0145 574 ProSitePatterns Chaperonins cpn60 signature. 435 446 IPR018370 GO:0005524|GO:0006457
Lal18g0145 574 PANTHER CHAPERONIN CPN60-2, MITOCHONDRIAL 26 566 - -
Lal18g0145 574 TIGRFAM GroEL: chaperonin GroL 34 555 IPR001844 GO:0042026|GO:0140662
Lal18g0145 574 PRINTS 60kDa chaperonin signature 57 83 IPR001844 GO:0042026|GO:0140662
Lal18g0145 574 PRINTS 60kDa chaperonin signature 113 140 IPR001844 GO:0042026|GO:0140662
Lal18g0145 574 PRINTS 60kDa chaperonin signature 298 321 IPR001844 GO:0042026|GO:0140662
Lal18g0145 574 PRINTS 60kDa chaperonin signature 380 405 IPR001844 GO:0042026|GO:0140662
Lal18g0145 574 PRINTS 60kDa chaperonin signature 428 449 IPR001844 GO:0042026|GO:0140662
Lal18g0145 574 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 26 566 - -
Lal18g0145 574 Gene3D - 36 553 IPR027413 -
Lal18g0145 574 CDD GroEL 34 554 IPR001844 GO:0042026|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0145 Lal-Chr18 1145692 1153320 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0145 K04077 - gmx:100787285 981.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0145 18 1145692 1153320 Lal18g0145 18 1145692 1153320 ECH