LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal18g0136	ATGTCTCACACATCTCATTTACTCAATCATTCCAGAAAGTTGAAAAATGCTTCAAATTTGCTACACCATCAGCGTGCCCTTTTCGTTCCGTGTTTTTCTACTGATGCTCAATCCTCTGTTAGCACTAAACGTGATATGTTGAAAACCCGATACCTTGGGTATGAGTCTTCATCAAGAAATGGTGTCCCTAAACAAGCTCCCAACTTTACTAAAAGAAACATGTCCATGGTTACCATGGGAAGGGGTTCCATCGGTGAATCCGTGTTCAATGGAGAGATTTCACGAAGTTCACAGTTTCAGTCAAGGAGGTGTTACGCATCAGCTTCAGACCTCCCACCGCACCAGGCAATTGGAATGCCTTCTCTGTCACCTACAATGACTGAGGGTAACATTGCAAGATGGTTGAAGAAAGAAGGCGATAAGGTTTCTACTGGTGAAGTGCTTTGTGAAGTTGAAACTGACAAAGCAACAGTAGAGATGGAATGCATGGAAGAAGGCTATCTTGCCAAGATAGTTTATGGGGATGGGTCAAAAGAAATTAAAGTTGGCGAGGTAATTGCCATAACTGTTGAAGATGAGGAGGATATTGCGAAGTTTAAAGATTACCAACCTTCAGCATCAGAATCAGGTGATGCCAATGCCAAAGAAGCATCTGCCCCTCCTCCACCTAAGAAGGAGGTGGTAGAGGAGCCTGCCCAAGAACCTAAGTCAAAGGTTTCCAAACCCAGTGCCCAACCTTCATCTGGAGATCGCATATTTGCTAGCCCTCTTGCTAGAAAGTTGGCTGAAGAGAAAAACGTACCCCTCTCAAGCATTAAGGGTACAGGATCTGAAGGGCTCATTGTTAAGGGTGACATTGAAGATTATTTGGCTTCTGGAGTTAAAGAAGTTTCAGCTCCCTCAAAGGCCAAGACTGCAACTGATGCTGCCTTGGACTTTACCGATATTCCTGTCTCTCAGATAAGGAAGATCACTGCCTCACGTCTTTTATTATCAAAACAAACTATTCCTCATTACTATTTGACAGTAGATACATGTGTTGACAAACTTATGAGTTTGCGGACAAAACTTAATTCATTACAAGAAGCCTCTGGTGGGCCCCGGATATCAGTTAATGACCTTGTAATTAAGGCTGCTGCTTTGGCTCTCCGTAAAGTTCCTCAATGTAACAGTTCATGGACAAATGACTATATTCGCCAGTATCATAATGTTAATGTTAATGTTGCAGTGCAGACTGATCATGGACTCTTTGTTCCAGTCGTCAGGGATGCAGACAAGAAAGGCCTCTCTACAATAGGTGAAGAGGTCAAACAATTGGCAAAGAAAGCCAAGGAAAACAGCTTGAAACCCCAAGATTACGAGGGAGGTACATTTACGGTGTCTAACCTTGGAGGGCCATTTGGTGTCAAACAGTTCTGTGCTATCATCAATCCTCCTCAATCAGGCATTCTTGCAGTTGGATCTGCTGAGAAGAGGGTCGTGCCGGGTTCAGGTGCAGAAGAATTCAAGTTTGCTTCCTTCATGGCTGTAACCCTCAGCTGTGATCACCGTGTAATAGATGGTGCAATTGGTGCTGAATGGTTAAAAGCATTCAAAGGCTATATTGAAAACCCGGAATCCATGTTGTTGTAA	1632	0.4344	MSHTSHLLNHSRKLKNASNLLHHQRALFVPCFSTDAQSSVSTKRDMLKTRYLGYESSSRNGVPKQAPNFTKRNMSMVTMGRGSIGESVFNGEISRSSQFQSRRCYASASDLPPHQAIGMPSLSPTMTEGNIARWLKKEGDKVSTGEVLCEVETDKATVEMECMEEGYLAKIVYGDGSKEIKVGEVIAITVEDEEDIAKFKDYQPSASESGDANAKEASAPPPPKKEVVEEPAQEPKSKVSKPSAQPSSGDRIFASPLARKLAEEKNVPLSSIKGTGSEGLIVKGDIEDYLASGVKEVSAPSKAKTATDAALDFTDIPVSQIRKITASRLLLSKQTIPHYYLTVDTCVDKLMSLRTKLNSLQEASGGPRISVNDLVIKAAALALRKVPQCNSSWTNDYIRQYHNVNVNVAVQTDHGLFVPVVRDADKKGLSTIGEEVKQLAKKAKENSLKPQDYEGGTFTVSNLGGPFGVKQFCAIINPPQSGILAVGSAEKRVVPGSGAEEFKFASFMAVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL	543

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal18g0136	543	Gene3D	-	247	296	IPR036625	GO:0016746
	Lal18g0136	543	MobiDBLite	consensus disorder prediction	203	250	-	-
	Lal18g0136	543	ProSiteProfiles	Peripheral subunit-binding (PSBD) domain profile.	253	290	IPR004167	GO:0016746
	Lal18g0136	543	TIGRFAM	PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase	117	543	IPR006257	GO:0004742\|GO:0006090\|GO:0045254
	Lal18g0136	543	Pfam	e3 binding domain	252	287	IPR004167	GO:0016746
	Lal18g0136	543	ProSitePatterns	2-oxo acid dehydrogenases acyltransferase component lipoyl binding site.	139	168	IPR003016	-
	Lal18g0136	543	CDD	lipoyl_domain	117	188	-	-
	Lal18g0136	543	Gene3D	-	297	541	IPR023213	-
	Lal18g0136	543	Gene3D	-	109	214	-	-
	Lal18g0136	543	PANTHER	DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX	59	543	-	-
	Lal18g0136	543	PANTHER	DIHYDROLIPOYLLYSINE-RESIDUE ACETYLTRANSFERASE COMPONENT 3 OF PYRUVATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL	59	543	-	-
	Lal18g0136	543	SUPERFAMILY	Single hybrid motif	114	208	IPR011053	-
	Lal18g0136	543	Pfam	2-oxoacid dehydrogenases acyltransferase (catalytic domain)	313	543	IPR001078	GO:0016746
	Lal18g0136	543	ProSiteProfiles	Biotinyl/lipoyl domain profile.	114	190	IPR000089	-
	Lal18g0136	543	SUPERFAMILY	Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex	246	291	IPR036625	GO:0016746
	Lal18g0136	543	Pfam	Biotin-requiring enzyme	116	188	IPR000089	-
	Lal18g0136	543	SUPERFAMILY	CoA-dependent acyltransferases	312	543	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal18g0136	Lal-Chr18	1094692	1103629	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal18g0136	5	543	Acyl Lipid Metabolism Gene Families	AT3G13930	68.603	0.0	739

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal18g0136	K00627		-	gmx:100778218	856.67