Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0116 ATGATTCACATTGTTCTCCTCCTCCTTCCACTTCTCTTATCCATTTCACATGCTTCTGTCAATGATTTCTGTGTAGCAGACCTTAATGGTTCAGATGGTCCTTCAGGGTATCCCTGCAAGCCTCCTACAAAAGTAAACGAACATGACTTTGTATATGCTGGCTTAGCTGCTGCAGGAAACACCACAAACATTATCAATGCTGCTGTAACACCTGCATTTGTTGCTCAATTCCCAGGTCTAAATGGCCTTGGTCTTTCTGCAGCAAGGTTAGACATTGCTTCTGGTGGTGTAATCCCTCTTCATACTCATCCTGGTGCTTCTGAATTATTAATAGTCACACAAGGTTATGTCACTGCTGGGTTTATAGCATCAGATAACTCAGTTTATGTGAAGACACTTTCAAAGGGACAACTTTTCATTTTGCCACAAGGGTTGTTGCATTTTCAAGTAGCTTATGGTAAGAGAAAAGCTGTTGCTTATGCTGTTTTCAGTAGCTCTAATCCAGGACTTCAAATACTTGATTTTGCATTGTTTGCAAGCAACTTCTCTTCTTCATTGATTACACAAACTACTTTCCTTGACCCTGAACAAGTGAAGAAGCTTAAGAGTGTTCTTGGTGGTAGTGGCTAG 630 0.4079 MIHIVLLLLPLLLSISHASVNDFCVADLNGSDGPSGYPCKPPTKVNEHDFVYAGLAAAGNTTNIINAAVTPAFVAQFPGLNGLGLSAARLDIASGGVIPLHTHPGASELLIVTQGYVTAGFIASDNSVYVKTLSKGQLFILPQGLLHFQVAYGKRKAVAYAVFSSSNPGLQILDFALFASNFSSSLITQTTFLDPEQVKKLKSVLGGSG 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0116 209 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 1 5 205 - -
Lal18g0116 209 ProSitePatterns Germin family signature. 96 109 IPR019780 GO:0030145
Lal18g0116 209 SUPERFAMILY RmlC-like cupins 19 203 IPR011051 -
Lal18g0116 209 Gene3D Jelly Rolls 17 208 IPR014710 -
Lal18g0116 209 PRINTS Germin signature 101 121 IPR001929 GO:0030145
Lal18g0116 209 PRINTS Germin signature 131 151 IPR001929 GO:0030145
Lal18g0116 209 PRINTS Germin signature 164 179 IPR001929 GO:0030145
Lal18g0116 209 SMART Cupin_1_3 53 199 IPR006045 -
Lal18g0116 209 CDD cupin_OxOx 16 205 - -
Lal18g0116 209 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 5 205 - -
Lal18g0116 209 Pfam Cupin 55 199 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0116 Lal-Chr18 931414 932043 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0116 17 209 Miscellaneous Gene Families AT1G72610 64.249 1.05e-87 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0116 - - gmx:100500326 296.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0116 18 931414 932043 Lal18g0116 18 931414 932043 ECH